Variant report

Variant	rs10825449
Chromosome Location	chr10:56808870-56808871
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10430541	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10740606	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10740607	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10763168	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10763171	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10763176	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10825432	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10825438	0.93[ASN][1000 genomes]
rs10825454	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11004671	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11004677	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11004681	0.94[ASN][1000 genomes]
rs11004689	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11004696	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11004720	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11004721	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12217457	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1882469	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1922152	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1922153	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1922154	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1922158	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1922161	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1950139	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2384610	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2891554	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4421665	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4641371	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7893201	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7896003	0.94[ASN][1000 genomes]
rs7909014	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7912387	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7923704	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7924112	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9299555	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047184	chr10:56516350-56996193	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv895455	chr10:56638919-57295962	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1046922	chr10:56676401-56985163	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv540636	chr10:56676401-56985163	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv895457	chr10:56691305-56840690	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv551012	chr10:56768101-56849669	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1049005	chr10:56774620-57084089	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1035713	chr10:56775235-57063346	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv540638	chr10:56775235-57063346	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv470945	chr10:56795078-56849669	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv895459	chr10:56795078-57139743	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	esv3412550	chr10:56806296-56809594	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56807800-56809400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:56808200-56809200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:56808400-56809200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr10:56808400-56809400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr10:56808600-56809200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:56808800-56809200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:56808800-56809200	Enhancers	Brain Germinal Matrix	brain

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