Variant report

Variant	rs10825977
Chromosome Location	chr10:58810350-58810351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10159783	0.80[EUR][1000 genomes]
rs10825980	0.80[EUR][1000 genomes]
rs11005633	0.80[EUR][1000 genomes]
rs11005634	0.83[EUR][1000 genomes]
rs11005635	0.83[EUR][1000 genomes]
rs11005636	0.83[EUR][1000 genomes]
rs11005637	0.80[EUR][1000 genomes]
rs11005640	0.83[EUR][1000 genomes]
rs11005642	0.83[EUR][1000 genomes]
rs11005643	0.83[EUR][1000 genomes]
rs11005649	0.82[EUR][1000 genomes]
rs11005650	0.82[EUR][1000 genomes]
rs11817703	0.80[EUR][1000 genomes]
rs12244109	0.80[EUR][1000 genomes]
rs12248920	0.80[EUR][1000 genomes]
rs12249184	0.80[EUR][1000 genomes]
rs12249333	0.80[EUR][1000 genomes]
rs12249748	0.83[EUR][1000 genomes]
rs12252740	0.83[EUR][1000 genomes]
rs12253650	0.80[EUR][1000 genomes]
rs12253767	0.80[EUR][1000 genomes]
rs12256059	0.82[EUR][1000 genomes]
rs12256536	0.80[EUR][1000 genomes]
rs12256850	0.83[EUR][1000 genomes]
rs12258368	0.83[EUR][1000 genomes]
rs12259332	0.80[EUR][1000 genomes]
rs12263769	0.80[EUR][1000 genomes]
rs12264630	0.80[EUR][1000 genomes]
rs12766671	0.80[EUR][1000 genomes]
rs12767717	0.82[EUR][1000 genomes]
rs17608226	0.81[EUR][1000 genomes]
rs1875772	0.83[EUR][1000 genomes]
rs28480357	0.81[EUR][1000 genomes]
rs3105304	0.81[EUR][1000 genomes]
rs34013264	0.82[EUR][1000 genomes]
rs34732397	0.80[EUR][1000 genomes]
rs35142122	0.92[EUR][1000 genomes]
rs35351600	0.82[EUR][1000 genomes]
rs4130804	0.83[EUR][1000 genomes]
rs61848446	0.80[EUR][1000 genomes]
rs61848448	0.80[EUR][1000 genomes]
rs61850175	0.80[EUR][1000 genomes]
rs61850176	0.80[EUR][1000 genomes]
rs61850179	0.83[EUR][1000 genomes]
rs61850205	0.80[EUR][1000 genomes]
rs67282369	0.80[EUR][1000 genomes]
rs71476355	0.80[EUR][1000 genomes]
rs7896592	0.80[EUR][1000 genomes]
rs7897071	0.80[EUR][1000 genomes]
rs7900082	0.83[EUR][1000 genomes]
rs7900777	0.80[EUR][1000 genomes]
rs7901263	0.80[EUR][1000 genomes]
rs7911192	0.80[EUR][1000 genomes]
rs7911719	0.80[EUR][1000 genomes]
rs7912290	0.80[EUR][1000 genomes]
rs7913331	0.80[EUR][1000 genomes]
rs7917184	0.80[EUR][1000 genomes]
rs957051	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895512	chr10:58640650-58834542	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv895513	chr10:58672533-58979792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1053600	chr10:58730645-58881832	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv895515	chr10:58802422-58913651	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3391632	chr10:58808995-58846212	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58810200-58810400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links