Variant report

Variant	rs10825993
Chromosome Location	chr10:58948297-58948298
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs10509071	0.87[EUR][1000 genomes]
rs10740697	0.85[EUR][1000 genomes]
rs10763457	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10763458	0.81[EUR][1000 genomes]
rs10825986	0.86[ASN][1000 genomes]
rs10825987	0.86[ASN][1000 genomes]
rs10825988	0.83[ASN][1000 genomes]
rs10825989	0.86[ASN][1000 genomes]
rs10825990	0.86[ASN][1000 genomes]
rs10825991	0.86[ASN][1000 genomes]
rs10825992	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10825994	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10825997	0.81[EUR][1000 genomes]
rs10825998	0.81[EUR][1000 genomes]
rs10825999	0.81[EUR][1000 genomes]
rs10826000	0.81[EUR][1000 genomes]
rs11005687	0.89[ASN][1000 genomes]
rs11005689	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11005690	0.81[EUR][1000 genomes]
rs11005693	0.81[EUR][1000 genomes]
rs11005694	0.81[EUR][1000 genomes]
rs1116023	0.86[ASN][1000 genomes]
rs1116026	0.86[ASN][1000 genomes]
rs1120047	0.87[ASN][1000 genomes]
rs11813074	0.81[EUR][1000 genomes]
rs11817223	0.89[ASN][1000 genomes]
rs12240722	0.86[ASN][1000 genomes]
rs12240853	0.87[ASN][1000 genomes]
rs12241230	0.81[EUR][1000 genomes]
rs12242643	0.87[ASN][1000 genomes]
rs12253845	0.81[EUR][1000 genomes]
rs12256265	0.87[EUR][1000 genomes]
rs12262585	0.87[ASN][1000 genomes]
rs12269721	0.86[ASN][1000 genomes]
rs1503914	0.87[ASN][1000 genomes]
rs16910285	0.89[ASN][1000 genomes]
rs1818173	0.84[ASN][1000 genomes]
rs1875773	0.83[ASN][1000 genomes]
rs1915690	0.86[ASN][1000 genomes]
rs1915691	0.86[ASN][1000 genomes]
rs2036510	0.86[ASN][1000 genomes]
rs2055552	0.81[EUR][1000 genomes]
rs2055553	0.81[EUR][1000 genomes]
rs2055554	0.81[EUR][1000 genomes]
rs2174232	0.89[ASN][1000 genomes]
rs2393225	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2393226	0.87[EUR][1000 genomes]
rs2893721	0.87[EUR][1000 genomes]
rs3104619	0.83[ASN][1000 genomes]
rs3104671	0.87[ASN][1000 genomes]
rs3104672	0.84[ASN][1000 genomes]
rs3104673	0.84[ASN][1000 genomes]
rs3104676	0.84[ASN][1000 genomes]
rs3104677	0.83[ASN][1000 genomes]
rs3104678	0.83[ASN][1000 genomes]
rs3105321	0.87[ASN][1000 genomes]
rs3105349	0.84[ASN][1000 genomes]
rs3105350	0.84[ASN][1000 genomes]
rs3105353	0.83[ASN][1000 genomes]
rs3105354	0.83[ASN][1000 genomes]
rs3105355	0.83[ASN][1000 genomes]
rs3105357	0.83[ASN][1000 genomes]
rs3105358	0.83[ASN][1000 genomes]
rs3107504	0.89[ASN][1000 genomes]
rs3107511	0.86[ASN][1000 genomes]
rs34384617	0.86[ASN][1000 genomes]
rs34563799	0.83[ASN][1000 genomes]
rs35642791	0.86[ASN][1000 genomes]
rs35674272	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4347303	0.86[ASN][1000 genomes]
rs4935159	0.81[EUR][1000 genomes]
rs4935160	0.81[EUR][1000 genomes]
rs4935688	0.89[ASN][1000 genomes]
rs4935689	0.86[ASN][1000 genomes]
rs4935690	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57964207	0.81[EUR][1000 genomes]
rs6481258	0.86[ASN][1000 genomes]
rs6481259	0.86[ASN][1000 genomes]
rs6481260	0.81[EUR][1000 genomes]
rs6481261	0.81[EUR][1000 genomes]
rs7068379	0.86[ASN][1000 genomes]
rs7068788	0.81[EUR][1000 genomes]
rs7073031	0.81[EUR][1000 genomes]
rs7073183	0.81[EUR][1000 genomes]
rs7075131	0.86[ASN][1000 genomes]
rs7076175	0.85[EUR][1000 genomes]
rs7076261	0.86[ASN][1000 genomes]
rs7077270	0.81[EUR][1000 genomes]
rs7079010	0.81[EUR][1000 genomes]
rs7080973	0.86[ASN][1000 genomes]
rs7081958	0.86[ASN][1000 genomes]
rs7083057	0.83[ASN][1000 genomes]
rs7083404	0.81[EUR][1000 genomes]
rs7084661	0.81[EUR][1000 genomes]
rs7085570	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7085848	0.81[EUR][1000 genomes]
rs7090028	0.81[EUR][1000 genomes]
rs7094185	0.86[ASN][1000 genomes]
rs7095592	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7097836	0.86[ASN][1000 genomes]
rs7098302	0.81[EUR][1000 genomes]
rs7905435	0.81[EUR][1000 genomes]
rs7905550	0.81[EUR][1000 genomes]
rs7909495	0.86[ASN][1000 genomes]
rs7912607	0.86[ASN][1000 genomes]
rs7915950	0.86[ASN][1000 genomes]
rs7920288	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895513	chr10:58672533-58979792	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv895517	chr10:58836950-58957774	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2756345	chr10:58846594-59027194	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv895521	chr10:58849853-58963458	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2829927	chr10:58849853-58979792	Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv895524	chr10:58853784-58953960	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv895525	chr10:58853784-58963458	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv895526	chr10:58853784-58970006	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv895527	chr10:58853784-58979792	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv895528	chr10:58853784-58991581	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv895540	chr10:58892275-58950588	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv551111	chr10:58892275-58953960	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv470951	chr10:58905847-58970006	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv551115	chr10:58913651-58963458	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv467287	chr10:58913651-58970006	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv551116	chr10:58913651-58970006	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3367662	chr10:58926008-58972421	Enhancers Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv551117	chr10:58938552-59007742	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv895543	chr10:58938552-59210800	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
20	nsv895544	chr10:58938552-59282980	Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
21	nsv895545	chr10:58938552-59313872	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:58930200-58959200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:58947800-58949200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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