Variant report

Variant	rs10826126
Chromosome Location	chr10:52266787-52266788
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:52260323..52263504-chr10:52265636..52267832,3	MCF-7	breast:
2	chr10:52266589..52268433-chr10:52270760..52273217,2	K562	blood:
3	chr10:52264059..52268097-chr10:52270623..52273217,5	K562	blood:
4	chr10:52259203..52261063-chr10:52265716..52267291,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1011881	0.84[CEU][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes]
rs10740714	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10763366	0.82[CHB][hapmap]
rs10763529	0.92[CEU][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10826100	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10826118	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11005937	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1203377	0.82[ASN][1000 genomes]
rs1203413	0.86[CHB][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs1203415	0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12356922	0.82[EUR][1000 genomes]
rs1548256	0.92[CEU][hapmap];0.86[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1569962	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569963	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1810576	0.89[EUR][1000 genomes]
rs1916566	0.86[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs2064760	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs2092996	0.92[CEU][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2099527	0.87[CHB][hapmap];0.96[JPT][hapmap];0.81[ASN][1000 genomes]
rs2117958	0.81[ASN][1000 genomes]
rs2144862	0.92[CEU][hapmap];0.91[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2339505	0.88[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2339506	0.91[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2574959	0.82[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs2842103	0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs2842111	0.81[ASN][1000 genomes]
rs4312019	0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs4536155	0.83[ASN][1000 genomes]
rs4935712	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4935727	0.93[CEU][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4935730	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7071603	0.92[CEU][hapmap];0.87[JPT][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7075289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7092014	0.81[ASN][1000 genomes]
rs715675	0.80[ASN][1000 genomes]
rs7904833	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs978588	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv895391	chr10:52260398-52291608	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv895392	chr10:52263910-52291608	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv467193	chr10:52265265-52289664	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv550855	chr10:52265265-52289664	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52247000-52271200	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:52249200-52266800	Weak transcription	Primary B cells from cord blood	blood
3	chr10:52253800-52268200	Weak transcription	Fetal Intestine Small	intestine
4	chr10:52255000-52267200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:52258000-52267200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:52258000-52271800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr10:52261000-52268200	Weak transcription	Gastric	stomach
8	chr10:52261800-52271400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:52262000-52266800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:52262000-52270800	Weak transcription	HSMMtube	muscle
11	chr10:52262200-52267400	Weak transcription	Small Intestine	intestine
12	chr10:52262200-52271200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr10:52262200-52287200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:52262400-52267600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:52262400-52267800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:52262400-52268600	Weak transcription	A549	lung
17	chr10:52262400-52270600	Weak transcription	Primary T cells from cord blood	blood
18	chr10:52262400-52271800	Weak transcription	Fetal Stomach	stomach
19	chr10:52262400-52272600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr10:52262600-52267800	Weak transcription	Fetal Intestine Large	intestine
21	chr10:52262600-52271200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:52262800-52267600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr10:52262800-52273000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr10:52263000-52267600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr10:52263800-52266800	Weak transcription	Right Atrium	heart
26	chr10:52263800-52267200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr10:52263800-52271400	Weak transcription	Placenta	Placenta
28	chr10:52263800-52271800	Weak transcription	Esophagus	oesophagus
29	chr10:52264000-52266800	Weak transcription	Right Ventricle	heart
30	chr10:52264000-52267200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:52264000-52267600	Enhancers	GM12878-XiMat	blood
32	chr10:52264000-52268000	Weak transcription	Primary B cells from peripheral blood	blood
33	chr10:52264000-52268000	Weak transcription	Stomach Mucosa	stomach
34	chr10:52264200-52266800	Weak transcription	Fetal Heart	heart
35	chr10:52264200-52267000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr10:52264200-52270800	Weak transcription	K562	blood
37	chr10:52264400-52269600	Weak transcription	Hela-S3	cervix
38	chr10:52264600-52271600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr10:52264800-52271000	Weak transcription	NHEK	skin
40	chr10:52265000-52271200	Enhancers	Brain Cingulate Gyrus	brain
41	chr10:52265000-52272400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr10:52265200-52268800	Enhancers	Pancreatic Islets	Pancreatic Islet
43	chr10:52265400-52266800	Enhancers	Brain Anterior Caudate	brain
44	chr10:52265400-52266800	Weak transcription	Thymus	Thymus
45	chr10:52265400-52267600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr10:52265400-52270000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
47	chr10:52265400-52270400	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr10:52265400-52273200	Enhancers	Brain Angular Gyrus	brain
49	chr10:52265800-52266800	Weak transcription	Lung	lung
50	chr10:52266000-52267600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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