Variant report

Variant	rs11005937
Chromosome Location	chr10:52255347-52255348
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52248823..52250649-chr10:52255298..52257622,2	MCF-7	breast:
2	chr10:52181046..52183288-chr10:52255236..52257097,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1011881	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10740714	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10763529	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10826100	0.98[ASN][1000 genomes]
rs10826118	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10826126	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1203377	0.84[ASN][1000 genomes]
rs1203413	0.88[ASN][1000 genomes]
rs1203415	0.86[ASN][1000 genomes]
rs12356922	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1548256	0.90[EUR][1000 genomes]
rs1569962	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1569963	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1810576	0.91[EUR][1000 genomes]
rs1916566	0.83[ASN][1000 genomes]
rs2092996	0.90[EUR][1000 genomes]
rs2099527	0.83[ASN][1000 genomes]
rs2117958	0.83[ASN][1000 genomes]
rs2144862	0.89[EUR][1000 genomes]
rs2339505	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2339506	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2574959	0.82[ASN][1000 genomes]
rs2688878	0.81[ASN][1000 genomes]
rs2842103	0.83[ASN][1000 genomes]
rs2842111	0.83[ASN][1000 genomes]
rs4312019	0.84[ASN][1000 genomes]
rs4536155	0.85[ASN][1000 genomes]
rs4935712	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4935727	0.89[EUR][1000 genomes]
rs4935730	0.91[EUR][1000 genomes]
rs7071603	0.90[EUR][1000 genomes]
rs7075289	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7092014	0.83[ASN][1000 genomes]
rs715675	0.82[ASN][1000 genomes]
rs7904833	0.96[ASN][1000 genomes]
rs978588	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52230600-52256400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr10:52231200-52257800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:52234000-52261600	Weak transcription	Pancreas	Pancrea
4	chr10:52237800-52261800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:52244400-52261800	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr10:52244800-52261800	Weak transcription	Primary T cells from cord blood	blood
7	chr10:52244800-52262000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr10:52247000-52271200	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:52248000-52261800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:52248200-52256200	Weak transcription	Left Ventricle	heart
11	chr10:52248800-52257600	Weak transcription	Ovary	ovary
12	chr10:52249200-52266800	Weak transcription	Primary B cells from cord blood	blood
13	chr10:52253800-52268200	Weak transcription	Fetal Intestine Small	intestine
14	chr10:52255000-52255400	Enhancers	Liver	Liver
15	chr10:52255000-52255600	Enhancers	GM12878-XiMat	blood
16	chr10:52255000-52256800	Enhancers	Brain Substantia Nigra	brain
17	chr10:52255000-52257200	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr10:52255000-52267200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:52255200-52257800	Enhancers	Brain Inferior Temporal Lobe	brain

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