Variant report

Variant	rs10827821
Chromosome Location	chr10:38027252-38027253
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38025555..38028373-chr10:38146555..38148266,2	K562	blood:
2	chr10:38022553..38025256-chr10:38025509..38028052,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198105	Chromatin interaction
ENSG00000236514	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10827830	0.88[AFR][1000 genomes]
rs10827834	0.82[AFR][1000 genomes]
rs11011332	0.88[AFR][1000 genomes]
rs11011356	0.88[AFR][1000 genomes]
rs11011357	0.88[AFR][1000 genomes]
rs11011358	0.83[AFR][1000 genomes]
rs11011368	0.88[AFR][1000 genomes]
rs11011375	0.88[AFR][1000 genomes]
rs11011385	0.82[AFR][1000 genomes]
rs11011391	0.82[AFR][1000 genomes]
rs11011393	0.82[AFR][1000 genomes]
rs11011403	0.82[AFR][1000 genomes]
rs11812927	0.82[AFR][1000 genomes]
rs11814622	0.82[AFR][1000 genomes]
rs11815775	0.88[AFR][1000 genomes]
rs11816307	0.82[AFR][1000 genomes]
rs11816995	0.88[AFR][1000 genomes]
rs11817696	0.91[AFR][1000 genomes]
rs11818933	0.82[AFR][1000 genomes]
rs11819551	0.88[AFR][1000 genomes]
rs12242131	0.88[AFR][1000 genomes]
rs12244864	1.00[AFR][1000 genomes]
rs12248857	0.82[AFR][1000 genomes]
rs12250012	0.83[AFR][1000 genomes]
rs12250465	0.88[AFR][1000 genomes]
rs12251570	0.88[AFR][1000 genomes]
rs12252091	0.97[AFR][1000 genomes]
rs12256181	0.88[AFR][1000 genomes]
rs12256794	0.82[AFR][1000 genomes]
rs12257632	0.94[AFR][1000 genomes]
rs12258024	0.88[AFR][1000 genomes]
rs12258128	0.82[AFR][1000 genomes]
rs12260310	0.82[AFR][1000 genomes]
rs12262814	0.82[AFR][1000 genomes]
rs12267847	0.82[AFR][1000 genomes]
rs12267923	0.97[AFR][1000 genomes]
rs12268435	0.88[AFR][1000 genomes]
rs12761218	0.88[AFR][1000 genomes]
rs12770231	0.82[AFR][1000 genomes]
rs12779056	0.82[AFR][1000 genomes]
rs12783599	1.00[AFR][1000 genomes]
rs34152840	1.00[AFR][1000 genomes]
rs34222428	0.88[AFR][1000 genomes]
rs34591573	0.88[AFR][1000 genomes]
rs34964888	0.88[AFR][1000 genomes]
rs35047448	0.88[AFR][1000 genomes]
rs35056062	1.00[AFR][1000 genomes]
rs35384774	0.81[AFR][1000 genomes]
rs35404142	0.88[AFR][1000 genomes]
rs35818588	1.00[AFR][1000 genomes]
rs57753536	0.82[AFR][1000 genomes]
rs60538050	0.82[AFR][1000 genomes]
rs71489160	0.88[AFR][1000 genomes]
rs71491203	0.88[AFR][1000 genomes]
rs71491212	0.88[AFR][1000 genomes]
rs71491214	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv975812	chr10:37990724-38084639	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv947607	chr10:38021929-38040760	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38022200-38037000	Weak transcription	HSMM	muscle
2	chr10:38026200-38028200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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