Variant report

Variant	rs12268435
Chromosome Location	chr10:37990546-37990547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10827821	0.88[AFR][1000 genomes]
rs10827830	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10827834	0.82[AFR][1000 genomes]
rs11011308	1.00[EUR][1000 genomes]
rs11011332	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11011356	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11011357	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11011358	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11011368	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11011375	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11011385	0.82[AFR][1000 genomes]
rs11011391	0.82[AFR][1000 genomes]
rs11498323	0.85[AMR][1000 genomes]
rs11815775	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11816995	0.88[AFR][1000 genomes]
rs11817696	1.00[AMR][1000 genomes]
rs11819551	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12242131	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12244864	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248857	0.82[AFR][1000 genomes]
rs12250012	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12250465	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12251570	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12252091	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256181	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12256794	0.82[AFR][1000 genomes]
rs12257632	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258024	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258128	0.82[AFR][1000 genomes]
rs12260310	0.82[AFR][1000 genomes]
rs12262814	0.82[AFR][1000 genomes]
rs12267923	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12761218	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12779056	0.82[AFR][1000 genomes]
rs12783599	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34079297	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34152840	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34222428	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34591573	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34964888	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35047448	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35056062	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35384774	0.92[AFR][1000 genomes]
rs35404142	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35818588	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36188980	0.85[AMR][1000 genomes]
rs60538050	0.82[AFR][1000 genomes]
rs71489160	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71491203	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71491212	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895030	chr10:37715737-38674609	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1045684	chr10:37765361-38426204	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv540564	chr10:37765361-38426204	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
4	nsv1040704	chr10:37940024-38451917	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv6443	chr10:37949704-37995270	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv1794823	chr10:37961177-38002067	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37990000-37991000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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