Variant report

Variant	rs10828339
Chromosome Location	chr10:23106231-23106232
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:23001422..23003561-chr10:23104622..23106652,2	K562	blood:
2	chr10:23105492..23108176-chr10:23344426..23345990,3	K562	blood:
3	chr10:22918208..22920899-chr10:23105511..23107568,2	K562	blood:
4	chr10:23103158..23106579-chr10:23341900..23344132,3	K562	blood:
5	chr10:23104132..23107506-chr10:23342632..23345950,5	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10764345	0.82[EUR][1000 genomes]
rs10828337	0.87[EUR][1000 genomes]
rs10828338	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828340	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828341	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12242970	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249190	0.83[AFR][1000 genomes]
rs12252439	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538887	0.84[EUR][1000 genomes]
rs1970447	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34966088	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35583770	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747446	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60291965	0.92[EUR][1000 genomes]
rs7074731	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7093263	0.84[AFR][1000 genomes]
rs7093389	0.85[EUR][1000 genomes]
rs72812424	0.81[AFR][1000 genomes]
rs7898655	0.83[EUR][1000 genomes]
rs7908030	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7913894	0.98[ASN][1000 genomes]
rs7913988	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894960	chr10:23049139-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv466833	chr10:23050683-23110797	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv894962	chr10:23050683-23113841	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv894965	chr10:23071128-23113841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23100200-23114400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:23104400-23106600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:23104400-23106600	Enhancers	NH-A	brain
4	chr10:23104800-23106600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:23104800-23112800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:23105000-23106600	Enhancers	HUVEC	blood vessel
7	chr10:23105000-23106600	Enhancers	NHEK	skin
8	chr10:23105200-23106400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:23105200-23106400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:23105200-23106400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr10:23105200-23106400	Enhancers	NHLF	lung
12	chr10:23105200-23106600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr10:23105200-23106600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:23105200-23106600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:23105200-23106600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr10:23105200-23106600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:23105200-23106600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:23105200-23106600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:23105200-23106600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:23105200-23106600	Enhancers	GM12878-XiMat	blood
21	chr10:23105200-23106600	Enhancers	Hela-S3	cervix
22	chr10:23105200-23106600	Enhancers	HMEC	breast
23	chr10:23105200-23106600	Enhancers	NHDF-Ad	bronchial
24	chr10:23105200-23106600	Enhancers	Osteobl	bone
25	chr10:23105200-23106800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr10:23105400-23106600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:23105400-23106600	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr10:23105600-23106400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:23105600-23106400	Enhancers	Fetal Intestine Large	intestine
30	chr10:23105600-23106600	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr10:23105600-23106600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:23105600-23106600	Enhancers	Fetal Intestine Small	intestine
33	chr10:23105600-23106600	Enhancers	HSMM	muscle
34	chr10:23106000-23106400	Enhancers	Primary T cells fromperipheralblood	blood
35	chr10:23106000-23106600	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr10:23106000-23106600	Flanking Active TSS	K562	blood
37	chr10:23106000-23113200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr10:23106200-23106400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr10:23106200-23106600	Enhancers	HSMMtube	muscle
40	chr10:23106200-23111800	Weak transcription	A549	lung

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