Variant report

Variant	rs72812424
Chromosome Location	chr10:23114078-23114079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23112958..23115115-chr10:23343406..23346225,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10466082	0.95[EUR][1000 genomes]
rs10828339	0.81[AFR][1000 genomes]
rs11592248	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs11596079	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249190	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1970447	0.81[AFR][1000 genomes]
rs61013475	0.94[EUR][1000 genomes]
rs7073439	0.97[EUR][1000 genomes]
rs7093263	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72812426	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7902635	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7922263	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23100200-23114400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:23109800-23115200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr10:23110000-23114800	Enhancers	HUVEC	blood vessel
4	chr10:23110200-23114200	Enhancers	NHDF-Ad	bronchial
5	chr10:23110200-23114600	Enhancers	NH-A	brain
6	chr10:23111400-23114200	Enhancers	NHLF	lung
7	chr10:23111800-23114400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:23111800-23114400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:23111800-23114600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:23111800-23114800	Enhancers	HepG2	liver
11	chr10:23111800-23114800	Enhancers	HSMM	muscle
12	chr10:23111800-23115200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:23111800-23115400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:23111800-23115400	Enhancers	HMEC	breast
15	chr10:23112000-23115200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:23112400-23120600	Weak transcription	HSMMtube	muscle
17	chr10:23112600-23115200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr10:23112800-23114400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr10:23112800-23115200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr10:23113200-23114400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:23113200-23115000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:23113400-23115000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:23113600-23114600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr10:23113800-23114200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
25	chr10:23113800-23114200	Flanking Active TSS	NHEK	skin
26	chr10:23113800-23114200	Flanking Active TSS	Osteobl	bone
27	chr10:23113800-23114600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:23113800-23116000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr10:23114000-23114200	Enhancers	Hela-S3	cervix
30	chr10:23114000-23114800	Weak transcription	Esophagus	oesophagus
31	chr10:23114000-23116200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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