Variant report

Variant	rs7902635
Chromosome Location	chr10:23117216-23117217
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10466082	0.92[EUR][1000 genomes]
rs10828338	1.00[YRI][hapmap]
rs11592248	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11596079	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12249190	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12259839	1.00[MEX][hapmap]
rs61013475	0.91[EUR][1000 genomes]
rs7073439	0.94[EUR][1000 genomes]
rs7074731	1.00[YRI][hapmap]
rs7093263	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72812424	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72812426	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7922263	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23112400-23120600	Weak transcription	HSMMtube	muscle
2	chr10:23114400-23117400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:23114400-23117600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr10:23114800-23117600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:23114800-23118200	Weak transcription	HSMM	muscle
6	chr10:23115000-23120400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:23115000-23120400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:23115200-23117400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:23115200-23120400	Weak transcription	Esophagus	oesophagus
10	chr10:23116200-23120400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:23116800-23118000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:23117200-23118600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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