Variant report

Variant	rs72812426
Chromosome Location	chr10:23114937-23114938
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23112958..23115115-chr10:23343406..23346225,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10466082	0.92[EUR][1000 genomes]
rs11592248	0.80[AMR][1000 genomes]
rs11596079	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12249190	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61013475	0.91[EUR][1000 genomes]
rs7073439	0.94[EUR][1000 genomes]
rs7093263	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72812424	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7902635	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7922263	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894961	chr10:23049139-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv894963	chr10:23050683-23121820	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv894964	chr10:23050683-23128475	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23109800-23115200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:23111800-23115200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr10:23111800-23115400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:23111800-23115400	Enhancers	HMEC	breast
5	chr10:23112000-23115200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:23112400-23120600	Weak transcription	HSMMtube	muscle
7	chr10:23112600-23115200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:23112800-23115200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:23113200-23115000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr10:23113400-23115000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr10:23113800-23116000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:23114000-23116200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:23114200-23115400	Enhancers	NHEK	skin
14	chr10:23114400-23115400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr10:23114400-23117400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:23114400-23117600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr10:23114600-23115000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr10:23114600-23115200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:23114600-23116000	Enhancers	K562	blood
20	chr10:23114600-23117200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:23114800-23115000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr10:23114800-23115000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr10:23114800-23115200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr10:23114800-23115200	Enhancers	Esophagus	oesophagus
25	chr10:23114800-23115200	Enhancers	GM12878-XiMat	blood
26	chr10:23114800-23115200	Active TSS	HepG2	liver
27	chr10:23114800-23117600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr10:23114800-23118200	Weak transcription	HSMM	muscle

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