Variant report

Variant	rs10829010
Chromosome Location	chr10:26776793-26776794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10508719	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12261655	1.00[EUR][1000 genomes]
rs12261938	1.00[EUR][1000 genomes]
rs12267406	1.00[EUR][1000 genomes]
rs7067572	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7068899	1.00[EUR][1000 genomes]
rs73594355	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26767200-26777400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:26769400-26792800	Weak transcription	Spleen	Spleen
3	chr10:26769400-26797000	Weak transcription	Pancreas	Pancrea
4	chr10:26769400-26800600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:26769400-26801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:26769400-26802000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:26771600-26776800	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:26771600-26777400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:26771600-26778400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr10:26771800-26777400	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:26771800-26777600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr10:26772400-26779600	Genic enhancers	Fetal Thymus	thymus
13	chr10:26774200-26776800	Enhancers	Primary hematopoietic stem cells	blood
14	chr10:26774200-26776800	Enhancers	Placenta Amnion	Placenta Amnion
15	chr10:26774200-26789200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:26774800-26778600	Strong transcription	Dnd41	blood
17	chr10:26775400-26776800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
18	chr10:26775400-26777200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:26775400-26778600	Genic enhancers	Primary B cells from cord blood	blood
20	chr10:26775600-26777200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:26775800-26776800	Flanking Active TSS	Primary T cells from cord blood	blood
22	chr10:26775800-26777800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr10:26776000-26776800	Flanking Active TSS	GM12878-XiMat	blood
24	chr10:26776200-26776800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:26776200-26777200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:26776200-26777400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:26776400-26776800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:26776400-26776800	Enhancers	Fetal Stomach	stomach
29	chr10:26776400-26776800	Active TSS	A549	lung
30	chr10:26776400-26777200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr10:26776400-26777200	Weak transcription	Thymus	Thymus
32	chr10:26776400-26777400	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr10:26776400-26780800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr10:26776600-26777000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:26776600-26777200	Enhancers	Primary T cells fromperipheralblood	blood
36	chr10:26776600-26777200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:26776600-26777400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr10:26776600-26777600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:26776600-26777600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr10:26776600-26777800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:26776600-26777800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr10:26776600-26777800	Enhancers	NHEK	skin
43	chr10:26776600-26777800	Enhancers	Osteobl	bone
44	chr10:26776600-26778600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr10:26776600-26778600	Enhancers	Primary T killer memory cells from peripheral blood	blood
46	chr10:26776600-26778600	Enhancers	Hela-S3	cervix
47	chr10:26776600-26779000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr10:26776600-26779200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr10:26776600-26779200	Enhancers	Primary T helper naive cells from peripheral blood	blood
50	chr10:26776600-26779400	Enhancers	Monocytes-CD14+_RO01746	blood

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