Variant report

Variant	rs12267406
Chromosome Location	chr10:26779973-26779974
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10508719	1.00[EUR][1000 genomes]
rs10829010	1.00[EUR][1000 genomes]
rs12261655	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12261938	1.00[EUR][1000 genomes]
rs7067572	1.00[EUR][1000 genomes]
rs7068899	1.00[EUR][1000 genomes]
rs73594355	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv1043832	chr10:26669040-26809400	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26769400-26792800	Weak transcription	Spleen	Spleen
2	chr10:26769400-26797000	Weak transcription	Pancreas	Pancrea
3	chr10:26769400-26800600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:26769400-26801000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr10:26769400-26802000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr10:26774200-26789200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr10:26776400-26780800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:26776600-26780400	Weak transcription	Liver	Liver
9	chr10:26776600-26789800	Weak transcription	Lung	lung
10	chr10:26776600-26820200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:26776800-26781000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:26776800-26781600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:26777000-26780200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:26777400-26780200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:26777800-26780200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr10:26778000-26780800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr10:26778000-26780800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr10:26778000-26781600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr10:26778000-26793400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:26778200-26780200	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr10:26778200-26780400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr10:26778200-26781000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr10:26778200-26781200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:26778400-26781200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
25	chr10:26778400-26782200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:26778600-26780000	Weak transcription	Thymus	Thymus
27	chr10:26778600-26780200	Weak transcription	Primary B cells from cord blood	blood
28	chr10:26778600-26780200	Weak transcription	Dnd41	blood
29	chr10:26778600-26780200	Weak transcription	Hela-S3	cervix
30	chr10:26778600-26780800	Weak transcription	GM12878-XiMat	blood
31	chr10:26778600-26781000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr10:26778600-26781000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr10:26778600-26781000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr10:26779000-26780000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr10:26779000-26780200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr10:26779000-26780800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr10:26779000-26781200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr10:26779200-26780600	Weak transcription	A549	lung
39	chr10:26779200-26781000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr10:26779200-26781000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr10:26779200-26781000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:26779600-26788000	Strong transcription	Fetal Thymus	thymus
43	chr10:26779800-26780000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr10:26779800-26780600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr10:26779800-26781000	Weak transcription	Primary T cells from cord blood	blood
46	chr10:26779800-26781400	Enhancers	Adipose Nuclei	Adipose

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