Variant report

Variant	rs10829217
Chromosome Location	chr10:27533219-27533220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr10:27528804-27533681	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:27529521..27534854-chr10:27538591..27544292,11	K562	blood:
2	chr10:27442535..27445982-chr10:27528407..27534290,13	K562	blood:
3	chr10:27422273..27425391-chr10:27529619..27533685,5	MCF-7	breast:
4	chr10:27442176..27446829-chr10:27524472..27534671,19	K562	blood:

Variant related genes	Relation type
ACBD5	TF binding region
ENSG00000136758	Chromatin interaction
ENSG00000230445	Chromatin interaction
ENSG00000120539	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11015619	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11015620	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs11015624	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11015628	0.94[ASN][1000 genomes]
rs11812283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818418	0.88[ASN][1000 genomes]
rs12260818	0.88[ASN][1000 genomes]
rs12262209	0.88[ASN][1000 genomes]
rs12264871	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12411672	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12415447	0.93[ASN][1000 genomes]
rs12774718	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12775195	0.83[ASN][1000 genomes]
rs12775838	0.88[ASN][1000 genomes]
rs16916444	0.93[ASN][1000 genomes]
rs17748862	0.88[ASN][1000 genomes]
rs1930960	0.88[ASN][1000 genomes]
rs2027538	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2368220	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34983424	0.88[ASN][1000 genomes]
rs35053986	0.83[ASN][1000 genomes]
rs35931272	0.88[ASN][1000 genomes]
rs3818969	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4747592	1.00[ASN][1000 genomes]
rs4747594	1.00[ASN][1000 genomes]
rs55770293	0.88[ASN][1000 genomes]
rs56207199	0.88[ASN][1000 genomes]
rs56313380	0.88[ASN][1000 genomes]
rs56406502	0.88[ASN][1000 genomes]
rs61149145	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67395401	0.88[ASN][1000 genomes]
rs73598052	0.94[ASN][1000 genomes]
rs7918793	1.00[ASN][1000 genomes]
rs7919198	1.00[ASN][1000 genomes]
rs7919807	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7920681	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27532600-27534800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:27532600-27535400	Weak transcription	Left Ventricle	heart
3	chr10:27532600-27536400	Weak transcription	Fetal Muscle Leg	muscle
4	chr10:27532600-27536400	Weak transcription	Right Atrium	heart
5	chr10:27532600-27540400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:27532600-27541200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:27532600-27541200	Weak transcription	Esophagus	oesophagus
8	chr10:27532600-27541200	Weak transcription	Pancreas	Pancrea
9	chr10:27532600-27541200	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:27532800-27533400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr10:27532800-27534600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr10:27532800-27535600	Weak transcription	Fetal Intestine Small	intestine
13	chr10:27532800-27536400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr10:27532800-27536400	Weak transcription	Psoas Muscle	Psoas
15	chr10:27532800-27536600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr10:27532800-27537000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr10:27532800-27541000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr10:27532800-27541000	Weak transcription	Adipose Nuclei	Adipose
19	chr10:27532800-27541200	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:27532800-27541200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr10:27532800-27541200	Weak transcription	Right Ventricle	heart
22	chr10:27533000-27535000	Weak transcription	NH-A	brain
23	chr10:27533000-27535200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr10:27533000-27535200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:27533000-27535400	Weak transcription	Fetal Intestine Large	intestine
26	chr10:27533000-27536400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:27533000-27541000	Weak transcription	Hela-S3	cervix
28	chr10:27533000-27541200	Weak transcription	Primary T cells from cord blood	blood
29	chr10:27533000-27541200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr10:27533000-27541200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:27533000-27541200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:27533000-27541200	Weak transcription	Brain Substantia Nigra	brain
33	chr10:27533000-27541200	Weak transcription	Fetal Kidney	kidney
34	chr10:27533200-27533600	Enhancers	Dnd41	blood
35	chr10:27533200-27535200	Weak transcription	HepG2	liver
36	chr10:27533200-27536400	Weak transcription	Fetal Heart	heart

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