Variant report

Variant	rs73598052
Chromosome Location	chr10:27547760-27547761
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBP	chr10:27547760-27548425	H1-hESC	embryonic stem cell:	n/a	n/a
2	BACH1	chr10:27547487-27548278	H1-hESC	embryonic stem cell:	n/a	n/a
3	CHD1	chr10:27547704-27547761	H1-hESC	embryonic stem cell:	n/a	n/a
4	CTBP2	chr10:27547547-27548537	H1-hESC	embryonic stem cell:	n/a	n/a
5	YY1	chr10:27547737-27548177	H1-hESC	embryonic stem cell:	n/a	chr10:27547856-27547865
6	MAX	chr10:27547668-27548554	H1-hESC	embryonic stem cell:	n/a	n/a
7	SIN3A	chr10:27547741-27548621	H1-hESC	embryonic stem cell:	n/a	chr10:27547975-27547986
8	TCF3	chr10:27547610-27548031	GM12878	blood:	n/a	chr10:27547689-27547703 chr10:27547691-27547701 chr10:27547686-27547699 chr10:27547950-27547964
9	E2F6	chr10:27547678-27548605	H1-hESC	embryonic stem cell:	n/a	chr10:27547699-27547708

Variant related genes	Relation type
ARMC4P1	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10829217	0.94[ASN][1000 genomes]
rs10829218	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11015624	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11015628	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812283	0.94[ASN][1000 genomes]
rs11812740	0.94[ASN][1000 genomes]
rs11818418	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12260818	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12262209	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12264871	0.87[ASN][1000 genomes]
rs12415447	0.87[ASN][1000 genomes]
rs12774718	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12775195	0.89[ASN][1000 genomes]
rs12775838	0.94[ASN][1000 genomes]
rs12778080	0.84[ASN][1000 genomes]
rs16916444	0.87[ASN][1000 genomes]
rs17748862	0.94[ASN][1000 genomes]
rs1930960	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2027538	0.94[ASN][1000 genomes]
rs34544855	0.84[ASN][1000 genomes]
rs34983424	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35053986	0.89[ASN][1000 genomes]
rs35931272	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4747592	0.94[ASN][1000 genomes]
rs4747594	0.94[ASN][1000 genomes]
rs55770293	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56207199	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56313380	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56406502	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61149145	0.94[ASN][1000 genomes]
rs67395401	0.94[ASN][1000 genomes]
rs7918793	0.94[ASN][1000 genomes]
rs7919198	0.94[ASN][1000 genomes]
rs7919807	0.94[ASN][1000 genomes]
rs7920681	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422253	chr10:27431366-27575370	Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv3337781	chr10:27472216-27666703	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27546600-27547800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr10:27546600-27547800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
3	chr10:27546600-27548600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
4	chr10:27546800-27549000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr10:27547200-27548000	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr10:27547400-27547800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:27547400-27547800	Bivalent Enhancer	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:27547400-27547800	Flanking Bivalent TSS/Enh	Primary T helper naive cells from peripheral blood	blood
9	chr10:27547400-27547800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
10	chr10:27547400-27547800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
11	chr10:27547400-27547800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr10:27547400-27547800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
13	chr10:27547400-27548000	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr10:27547400-27548000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:27547400-27548000	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:27547400-27548000	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
17	chr10:27547400-27548200	Flanking Bivalent TSS/Enh	Thymus	Thymus
18	chr10:27547400-27548200	Bivalent/Poised TSS	A549	lung
19	chr10:27547400-27548400	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
20	chr10:27547400-27548400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
21	chr10:27547400-27548400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
22	chr10:27547400-27548400	Bivalent/Poised TSS	Esophagus	oesophagus
23	chr10:27547400-27548400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
24	chr10:27547400-27548400	Bivalent/Poised TSS	Fetal Intestine Small	intestine
25	chr10:27547400-27548400	Active TSS	Pancreatic Islets	Pancreatic Islet
26	chr10:27547400-27548400	Bivalent/Poised TSS	GM12878-XiMat	blood
27	chr10:27547400-27548600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr10:27547400-27548600	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:27547400-27548600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr10:27547400-27548600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
31	chr10:27547400-27548600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
32	chr10:27547400-27548600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
33	chr10:27547400-27548600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
34	chr10:27547400-27548600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
35	chr10:27547400-27548600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
36	chr10:27547400-27548600	Active TSS	Brain Anterior Caudate	brain
37	chr10:27547400-27548600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
38	chr10:27547400-27548600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
39	chr10:27547400-27548600	Active TSS	Left Ventricle	heart
40	chr10:27547400-27548600	Active TSS	Right Atrium	heart
41	chr10:27547400-27548600	Active TSS	Right Ventricle	heart
42	chr10:27547400-27548600	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
43	chr10:27547400-27548600	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
44	chr10:27547400-27548600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
45	chr10:27547400-27548600	Bivalent/Poised TSS	Osteobl	bone
46	chr10:27547400-27548800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
47	chr10:27547400-27548800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr10:27547400-27548800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr10:27547400-27548800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:27547400-27548800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon

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