Variant report

Variant	rs10830988
Chromosome Location	chr11:92883601-92883602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10466352	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765587	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.97[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10830989	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10830996	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831004	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831006	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12420961	0.85[ASN][1000 genomes]
rs12786007	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1348871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1508608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1992803	0.87[JPT][hapmap]
rs2121468	0.83[GIH][hapmap];0.87[JPT][hapmap]
rs4753436	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs522508	0.85[ASN][1000 genomes]
rs546386	0.85[ASN][1000 genomes]
rs7110304	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7120307	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7925288	0.81[GIH][hapmap];0.87[JPT][hapmap];0.86[MKK][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv435	chr11:92853766-92887893	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv898178	chr11:92881933-92949447	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv898179	chr11:92881933-92956873	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92867200-92896400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr11:92868000-92889000	Weak transcription	Adipose Nuclei	Adipose
3	chr11:92868400-92914600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:92875000-92892800	Weak transcription	Primary B cells from cord blood	blood
5	chr11:92875400-92910400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:92876400-92896600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:92876600-92883800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:92876600-92885000	Weak transcription	Fetal Lung	lung
9	chr11:92876600-92885200	Weak transcription	Primary T cells from cord blood	blood
10	chr11:92876600-92900400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr11:92876600-92910600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr11:92876800-92910600	Weak transcription	Lung	lung
13	chr11:92877000-92890400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:92877000-92911400	Weak transcription	Osteobl	bone
15	chr11:92877200-92890000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:92877200-92894800	Weak transcription	HSMM	muscle
17	chr11:92877800-92899600	Weak transcription	NHLF	lung
18	chr11:92877800-92915000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:92878000-92894600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:92878200-92888200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr11:92878400-92887400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr11:92878400-92910600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr11:92878600-92890800	Weak transcription	Left Ventricle	heart
24	chr11:92878800-92889200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:92878800-92890600	Weak transcription	Dnd41	blood
26	chr11:92878800-92893200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:92878800-92895800	Weak transcription	Brain Germinal Matrix	brain
28	chr11:92878800-92896000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr11:92879000-92889200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:92879000-92896600	Weak transcription	Ovary	ovary
31	chr11:92879000-92900200	Weak transcription	Fetal Muscle Leg	muscle
32	chr11:92879000-92910800	Weak transcription	HSMMtube	muscle
33	chr11:92879200-92890200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr11:92879200-92890400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr11:92879200-92892600	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr11:92879200-92896600	Weak transcription	Fetal Brain Female	brain
37	chr11:92879400-92885200	Weak transcription	Liver	Liver
38	chr11:92879600-92889200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr11:92879600-92890000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr11:92879600-92910000	Weak transcription	Fetal Brain Male	brain
41	chr11:92879600-92910800	Weak transcription	HMEC	breast
42	chr11:92880200-92894600	Weak transcription	Placenta	Placenta
43	chr11:92880400-92885800	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr11:92880400-92886600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:92880400-92895800	Weak transcription	Brain Angular Gyrus	brain
46	chr11:92881000-92888400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:92881000-92889000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:92881200-92894000	Weak transcription	Primary T helper cells fromperipheralblood	blood
49	chr11:92881200-92894800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:92881200-92899200	Weak transcription	NH-A	brain

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