Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10466352	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10501802	0.83[ASN][1000 genomes]
rs10765587	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10830982	0.84[ASN][1000 genomes]
rs10830983	0.83[ASN][1000 genomes]
rs10830988	0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs10830989	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10830996	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10831004	0.85[ASN][1000 genomes]
rs10831006	0.85[ASN][1000 genomes]
rs12420961	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12786007	0.93[CEU][hapmap];0.92[JPT][hapmap]
rs1348871	0.80[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1508608	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1508610	0.83[ASN][1000 genomes]
rs1508611	0.84[ASN][1000 genomes]
rs1562366	0.83[ASN][1000 genomes]
rs1992803	0.81[JPT][hapmap]
rs4753436	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs546386	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110304	0.85[ASN][1000 genomes]
rs7130429	0.81[ASN][1000 genomes]
rs990660	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv525304	chr11:92829904-92877533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv435	chr11:92853766-92887893	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92860000-92869600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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