Variant report

Variant	rs1562366
Chromosome Location	chr11:92851334-92851335
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10501802	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10830982	0.99[ASN][1000 genomes]
rs10830983	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10830984	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12420961	0.83[ASN][1000 genomes]
rs1446909	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1508610	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1508611	0.99[ASN][1000 genomes]
rs1562365	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs522508	0.83[ASN][1000 genomes]
rs546386	0.83[ASN][1000 genomes]
rs7130429	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs990660	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv525304	chr11:92829904-92877533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92848400-92851600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:92849600-92851400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr11:92849800-92851400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:92849800-92851600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr11:92849800-92852000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:92850000-92851400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr11:92850400-92851400	Enhancers	H9 Cell Line	embryonic stem cell
8	chr11:92850600-92851800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:92850800-92851400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr11:92850800-92851400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:92850800-92851400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
12	chr11:92851000-92851400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr11:92851000-92854600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:92851000-92855600	Weak transcription	Fetal Lung	lung
15	chr11:92851200-92852000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr11:92851200-92852200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:92851200-92852200	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr11:92851200-92852200	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:92851200-92853400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links