Variant report

Variant	rs10830982
Chromosome Location	chr11:92849235-92849236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10501802	0.99[ASN][1000 genomes]
rs10830981	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10830983	0.99[ASN][1000 genomes]
rs12420961	0.84[ASN][1000 genomes]
rs1508610	0.99[ASN][1000 genomes]
rs1508611	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1562366	0.99[ASN][1000 genomes]
rs522508	0.84[ASN][1000 genomes]
rs546386	0.84[ASN][1000 genomes]
rs7130429	0.97[ASN][1000 genomes]
rs990660	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555903	chr11:92640787-92877533	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv526546	chr11:92742186-92851178	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv525304	chr11:92829904-92877533	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92845800-92849600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr11:92846000-92849800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:92846200-92849800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:92846800-92849600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:92846800-92849600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:92847600-92849400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:92847600-92849600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr11:92847600-92850800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:92848000-92849400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:92848200-92849600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:92848200-92849600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:92848400-92851600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:92848600-92849800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr11:92848600-92850000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:92848600-92850200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:92848800-92849800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:92848800-92850000	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:92849000-92849800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:92849000-92850400	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:92849200-92851200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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