Variant report

Variant	rs10831010
Chromosome Location	chr11:92971874-92971875
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10765593	0.80[EUR][1000 genomes]
rs10765596	0.84[ASN][1000 genomes]
rs10831011	0.91[ASN][1000 genomes]
rs10831016	1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs10831017	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11020218	0.91[ASN][1000 genomes]
rs11020228	0.84[ASN][1000 genomes]
rs11020229	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11020230	0.85[ASN][1000 genomes]
rs11020233	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11020234	1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11020235	1.00[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.91[TSI][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11020236	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12099012	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12419806	0.84[ASN][1000 genomes]
rs12803876	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.98[TSI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808030	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1374477	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1446904	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1446905	0.91[ASN][1000 genomes]
rs1446907	0.91[ASN][1000 genomes]
rs1446908	0.91[ASN][1000 genomes]
rs1446918	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1446919	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1446920	1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1446921	0.84[ASN][1000 genomes]
rs1992803	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs2121468	0.87[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2399641	0.84[ASN][1000 genomes]
rs4313534	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4396248	0.84[ASN][1000 genomes]
rs4753082	0.86[ASN][1000 genomes]
rs6483228	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7482501	0.91[ASN][1000 genomes]
rs7925288	0.83[CEU][hapmap];0.93[CHB][hapmap];0.88[JPT][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes]
rs7930702	0.91[CHD][hapmap];0.96[ASN][1000 genomes]
rs935450	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv436	chr11:92967000-92985674	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv514640	chr11:92967440-92972784	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv3464353	chr11:92967896-92972804	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3464331	chr11:92967903-92972689	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3464342	chr11:92967919-92972744	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv826034	chr11:92967982-92972677	Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv826035	chr11:92967982-92972713	Flanking Active TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3464364	chr11:92968000-92972695	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv498765	chr11:92968001-92972695	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92971600-92972000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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