Variant report

Variant	rs1446921
Chromosome Location	chr11:93011252-93011253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93010148..93012075-chr11:93062863..93065501,2	K562	blood:

Variant related genes	Relation type
ENSG00000165325	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10765596	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10831010	0.84[ASN][1000 genomes]
rs10831011	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10831016	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10831017	0.96[ASN][1000 genomes]
rs11020218	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11020228	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11020229	0.92[ASN][1000 genomes]
rs11020230	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11020233	0.96[ASN][1000 genomes]
rs11020234	0.96[ASN][1000 genomes]
rs11020235	0.96[ASN][1000 genomes]
rs11020236	0.96[ASN][1000 genomes]
rs12099012	0.85[ASN][1000 genomes]
rs12419806	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12803876	0.84[ASN][1000 genomes]
rs12808030	0.85[ASN][1000 genomes]
rs1374477	0.95[ASN][1000 genomes]
rs1446904	0.85[ASN][1000 genomes]
rs1446905	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1446907	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1446908	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1446918	0.96[ASN][1000 genomes]
rs1446919	0.96[ASN][1000 genomes]
rs1446920	0.96[ASN][1000 genomes]
rs2121470	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2399641	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4313534	0.96[ASN][1000 genomes]
rs4396248	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4753082	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6483228	0.87[ASN][1000 genomes]
rs7482501	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7930702	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs935450	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93009200-93011800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:93009200-93012200	Weak transcription	Fetal Stomach	stomach
3	chr11:93011200-93011400	Enhancers	Fetal Kidney	kidney

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