Variant report

Variant	rs10831104
Chromosome Location	chr11:93555987-93555988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
VSTM5	TF binding region
ENSG00000206911	TF binding region
ENSG00000042429	Chromatin interaction
ENSG00000166012	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11603364	1.00[JPT][hapmap]
rs17652258	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs607349	1.00[JPT][hapmap]
rs644306	1.00[JPT][hapmap]
rs72978456	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7310	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10831104	C11orf54	cis	Esophagus Muscularis	GTEx
rs10831104	TBC1D16	cis	Cerebellum	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93546400-93566200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:93549200-93559200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:93550800-93564400	Weak transcription	Pancreas	Pancrea
4	chr11:93552000-93556200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:93553600-93556200	Enhancers	HepG2	liver
6	chr11:93553600-93557200	Weak transcription	Right Atrium	heart
7	chr11:93554200-93567200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:93554800-93558400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr11:93554800-93562800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr11:93555400-93556000	Enhancers	Stomach Mucosa	stomach
11	chr11:93555600-93564400	Weak transcription	Fetal Intestine Small	intestine
12	chr11:93555800-93556000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:93555800-93556000	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links