Variant report

Variant	rs72978456
Chromosome Location	chr11:93576727-93576728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93574931..93577812-chr11:93581289..93582861,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10831104	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17652258	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93566200-93577000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:93570400-93579200	Enhancers	Stomach Mucosa	stomach
3	chr11:93572600-93582800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:93573200-93577000	Weak transcription	Placenta	Placenta
5	chr11:93574200-93577400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:93574400-93582800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr11:93574800-93579800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:93575800-93577200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:93575800-93577200	Weak transcription	NHDF-Ad	bronchial
10	chr11:93575800-93578200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:93575800-93578200	Weak transcription	HSMMtube	muscle
12	chr11:93575800-93578400	Weak transcription	Osteobl	bone
13	chr11:93575800-93582600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:93575800-93582800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:93576000-93578000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:93576000-93578200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:93576000-93578200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr11:93576200-93577400	Weak transcription	NHEK	skin
19	chr11:93576600-93581800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr11:93576600-93583000	Weak transcription	Esophagus	oesophagus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links