Variant report

Variant	rs10831138
Chromosome Location	chr11:93640468-93640469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10501810	0.84[EUR][1000 genomes]
rs10741478	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10765638	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10765639	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10765640	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10765641	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10765642	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765643	0.83[AMR][1000 genomes]
rs10831136	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831137	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10831139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831141	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10831142	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11020582	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020585	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11020586	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12806128	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1354765	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1395384	0.84[EUR][1000 genomes]
rs1395386	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1395387	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1506656	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1506657	0.83[AFR][1000 genomes]
rs1518571	0.81[EUR][1000 genomes]
rs1518578	0.83[EUR][1000 genomes]
rs1546400	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1607404	0.83[EUR][1000 genomes]
rs1827931	0.84[EUR][1000 genomes]
rs2089337	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2102332	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2102333	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2456559	0.81[EUR][1000 genomes]
rs2462750	0.81[EUR][1000 genomes]
rs2511373	0.81[EUR][1000 genomes]
rs2511375	0.81[EUR][1000 genomes]
rs2511376	0.80[EUR][1000 genomes]
rs4753111	0.84[EUR][1000 genomes]
rs4753520	0.82[EUR][1000 genomes]
rs7101791	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7102555	0.82[EUR][1000 genomes]
rs7114457	0.83[EUR][1000 genomes]
rs7115629	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72962810	0.84[EUR][1000 genomes]
rs7935801	0.84[EUR][1000 genomes]
rs7936182	0.84[EUR][1000 genomes]
rs7942444	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8181530	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8181533	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8181567	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8181578	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9633811	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv10748	chr11:93636188-93640796	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
4	esv11328	chr11:93638553-93641193	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	esv16352	chr11:93640235-93640796	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93637400-93641800	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr11:93638400-93640600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:93638400-93643000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:93638600-93642600	Enhancers	HMEC	breast
5	chr11:93639000-93641200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:93639000-93641200	Weak transcription	NHEK	skin
7	chr11:93639000-93641400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:93639000-93641400	Weak transcription	Osteobl	bone
9	chr11:93639200-93640600	Weak transcription	HSMM	muscle
10	chr11:93639200-93641200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:93639200-93641200	Weak transcription	Placenta	Placenta
12	chr11:93639200-93641200	Weak transcription	HSMMtube	muscle
13	chr11:93639400-93640600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr11:93639600-93642800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:93640200-93641200	Weak transcription	NHDF-Ad	bronchial
16	chr11:93640200-93641400	Weak transcription	NH-A	brain
17	chr11:93640400-93641400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:93640400-93641400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:93640400-93641400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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