Variant report

Variant	rs12806128
Chromosome Location	chr11:93634972-93634973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10741478	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10765638	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10765639	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10765640	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10765641	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10765642	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10831136	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10831137	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10831138	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10831139	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10831140	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10831141	0.86[EUR][1000 genomes]
rs10831142	0.88[EUR][1000 genomes]
rs11020582	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11020585	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11020586	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12788325	0.96[ASN][1000 genomes]
rs12789389	0.92[ASN][1000 genomes]
rs1354765	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1354766	0.96[ASN][1000 genomes]
rs1395386	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1395387	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1506656	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1546400	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089337	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2102332	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2102333	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35919303	0.90[ASN][1000 genomes]
rs7101791	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7115629	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7942444	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8181530	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8181533	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8181567	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8181578	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9633811	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93634400-93638400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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