Variant report

Variant	rs35919303
Chromosome Location	chr11:93642353-93642354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93473884..93475767-chr11:93642001..93643799,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166012	Chromatin interaction
ENSG00000182919	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11020555	0.83[EUR][1000 genomes]
rs11607920	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12788325	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12789389	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12794588	0.81[EUR][1000 genomes]
rs12806128	0.90[ASN][1000 genomes]
rs1354765	0.90[ASN][1000 genomes]
rs1354766	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1546400	0.90[ASN][1000 genomes]
rs34451374	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35855374	0.85[EUR][1000 genomes]
rs58046905	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61904771	0.82[EUR][1000 genomes]
rs7942444	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93638400-93643000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:93638600-93642600	Enhancers	HMEC	breast
3	chr11:93639600-93642800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:93641000-93642600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr11:93641200-93642600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:93641200-93642600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:93641200-93642600	Enhancers	HSMMtube	muscle
8	chr11:93641200-93642600	Enhancers	NHDF-Ad	bronchial
9	chr11:93641200-93642600	Enhancers	NHEK	skin
10	chr11:93641200-93642600	Enhancers	NHLF	lung
11	chr11:93641200-93643000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:93641400-93642400	Enhancers	NH-A	brain
13	chr11:93641400-93642600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:93641400-93642600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:93641400-93642600	Enhancers	Osteobl	bone
16	chr11:93641600-93642400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr11:93641600-93652800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:93641800-93642400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:93641800-93642600	Enhancers	HSMM	muscle
20	chr11:93642000-93655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:93642200-93649800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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