Variant report

Variant	rs34451374
Chromosome Location	chr11:93650575-93650576
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10741479	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10831150	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10831151	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020593	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020605	0.90[ASN][1000 genomes]
rs11020606	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020607	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11020608	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11020610	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11020616	0.84[ASN][1000 genomes]
rs1105113	0.84[ASN][1000 genomes]
rs1105114	0.83[ASN][1000 genomes]
rs11603095	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12785240	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12786407	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12786631	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12787903	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12789693	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12792942	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12794588	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12807496	0.84[ASN][1000 genomes]
rs2399748	0.84[ASN][1000 genomes]
rs2895491	0.84[ASN][1000 genomes]
rs34082624	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34537425	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34699227	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35579191	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35919303	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4753522	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4753523	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4753524	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55756119	0.86[ASN][1000 genomes]
rs58046905	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60079517	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7484198	0.87[ASN][1000 genomes]
rs7927632	0.88[ASN][1000 genomes]
rs7934440	0.84[ASN][1000 genomes]
rs7942055	0.86[ASN][1000 genomes]
rs877341	0.86[ASN][1000 genomes]
rs908746	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs908748	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv1796911	chr11:93642877-93688134	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93641600-93652800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:93642000-93655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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