Variant report

Variant	rs11020593
Chromosome Location	chr11:93649416-93649417
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10466334	0.84[EUR][1000 genomes]
rs10466335	0.85[EUR][1000 genomes]
rs10501809	0.85[EUR][1000 genomes]
rs10741479	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10765647	0.85[EUR][1000 genomes]
rs10831147	0.85[EUR][1000 genomes]
rs10831148	0.85[EUR][1000 genomes]
rs10831150	0.91[ASN][1000 genomes]
rs10831151	0.91[ASN][1000 genomes]
rs11020601	0.84[EUR][1000 genomes]
rs11020605	0.93[ASN][1000 genomes]
rs11020606	0.91[ASN][1000 genomes]
rs11020607	0.91[ASN][1000 genomes]
rs11020608	0.90[ASN][1000 genomes]
rs11020610	0.85[ASN][1000 genomes]
rs11020616	0.81[ASN][1000 genomes]
rs1105113	0.81[ASN][1000 genomes]
rs11603095	0.91[ASN][1000 genomes]
rs12785240	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12786407	0.82[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs12786631	0.88[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs12787903	0.90[ASN][1000 genomes]
rs12788325	0.81[EUR][1000 genomes]
rs12789389	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs12789693	0.85[ASN][1000 genomes]
rs12792942	0.90[ASN][1000 genomes]
rs12794588	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12807496	0.81[ASN][1000 genomes]
rs1354766	0.81[EUR][1000 genomes]
rs1518579	0.86[EUR][1000 genomes]
rs1607402	0.85[EUR][1000 genomes]
rs1607403	0.85[EUR][1000 genomes]
rs1827932	0.84[EUR][1000 genomes]
rs2399748	0.83[ASN][1000 genomes]
rs2895491	0.83[ASN][1000 genomes]
rs34082624	0.91[ASN][1000 genomes]
rs34451374	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34537425	0.91[ASN][1000 genomes]
rs34699227	0.91[ASN][1000 genomes]
rs35579191	0.91[ASN][1000 genomes]
rs4402256	0.85[EUR][1000 genomes]
rs4753113	0.85[EUR][1000 genomes]
rs4753522	0.91[ASN][1000 genomes]
rs4753523	0.91[ASN][1000 genomes]
rs4753524	0.89[ASN][1000 genomes]
rs55756119	0.83[ASN][1000 genomes]
rs60079517	0.90[ASN][1000 genomes]
rs6483280	0.85[EUR][1000 genomes]
rs6483281	0.84[EUR][1000 genomes]
rs6483283	0.85[EUR][1000 genomes]
rs7105031	0.85[EUR][1000 genomes]
rs7105060	0.85[EUR][1000 genomes]
rs7113080	0.85[EUR][1000 genomes]
rs7117597	0.86[EUR][1000 genomes]
rs7484198	0.84[ASN][1000 genomes]
rs7927632	0.85[ASN][1000 genomes]
rs7934440	0.81[ASN][1000 genomes]
rs7942055	0.83[ASN][1000 genomes]
rs877341	0.83[ASN][1000 genomes]
rs908746	0.85[ASN][1000 genomes]
rs908748	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv1796911	chr11:93642877-93688134	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93641600-93652800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:93642000-93655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:93642200-93649800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links