Variant report

Variant	rs11020605
Chromosome Location	chr11:93671838-93671839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10741479	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10831150	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10831151	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020593	0.93[ASN][1000 genomes]
rs11020603	0.82[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs11020604	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs11020606	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020607	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11020608	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11020610	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11020616	0.85[ASN][1000 genomes]
rs1105113	0.85[ASN][1000 genomes]
rs1105114	0.83[ASN][1000 genomes]
rs11603095	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12785240	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12786407	0.81[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12786631	0.81[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12787903	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12789389	0.95[GIH][hapmap];0.88[TSI][hapmap]
rs12789693	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12792942	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12794588	0.95[ASN][1000 genomes]
rs12807496	0.85[ASN][1000 genomes]
rs2399748	0.88[ASN][1000 genomes]
rs2895491	0.88[ASN][1000 genomes]
rs34082624	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34451374	0.90[ASN][1000 genomes]
rs34537425	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34699227	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35579191	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4254038	0.88[EUR][1000 genomes]
rs4753522	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4753523	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4753524	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55756119	0.86[ASN][1000 genomes]
rs60079517	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7484198	0.89[ASN][1000 genomes]
rs7927632	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7934440	0.85[ASN][1000 genomes]
rs7942055	0.86[ASN][1000 genomes]
rs877341	0.86[ASN][1000 genomes]
rs908746	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs908748	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv1796911	chr11:93642877-93688134	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv442	chr11:93665117-93717973	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv1792094	chr11:93670388-93688541	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv1800503	chr11:93670388-93688541	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1802331	chr11:93670388-93688541	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv1802534	chr11:93670388-93688541	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv1802586	chr11:93670388-93688541	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	esv1802849	chr11:93670388-93688541	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv1798558	chr11:93671838-93688514	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11020605	GPR83	cis	cerebellum	SCAN
rs11020605	MTNR1B	cis	cerebellum	SCAN
rs11020605	PANX1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93671200-93675600	Enhancers	HMEC	breast
2	chr11:93671400-93672200	Enhancers	NHEK	skin
3	chr11:93671600-93672200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:93671600-93675600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:93671800-93672600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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