Variant report

Variant	rs4402256
Chromosome Location	chr11:93660803-93660804
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10466334	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10466335	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10501809	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10741479	0.88[EUR][1000 genomes]
rs10765647	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10831147	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10831148	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11020593	0.85[EUR][1000 genomes]
rs11020601	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11020603	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11020604	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12785240	0.90[EUR][1000 genomes]
rs12792941	0.88[ASN][1000 genomes]
rs1518578	0.96[ASN][1000 genomes]
rs1518579	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1607402	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1607403	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1827932	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2008041	0.88[ASN][1000 genomes]
rs2456563	0.91[ASN][1000 genomes]
rs4254038	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4753113	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6483280	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6483281	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6483283	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102555	0.96[ASN][1000 genomes]
rs7105031	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7105060	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7113080	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117597	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7940973	0.88[ASN][1000 genomes]
rs7942236	0.88[ASN][1000 genomes]
rs7944194	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv1796911	chr11:93642877-93688134	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93656400-93669000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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