Variant report

Variant	rs11607920
Chromosome Location	chr11:93612397-93612398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11020555	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11605080	0.82[EUR][1000 genomes]
rs35855374	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35919303	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56360746	0.85[AMR][1000 genomes]
rs58046905	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs583247	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61904771	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93609000-93613200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:93609200-93613600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:93609800-93615400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:93610200-93613200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:93610600-93613000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr11:93610600-93613200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:93611000-93613400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr11:93611200-93613200	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:93611200-93613600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:93611400-93612800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:93611400-93613400	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr11:93611600-93613000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr11:93612000-93612600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:93612000-93614400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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