Variant report

Variant	rs11605080
Chromosome Location	chr11:93594733-93594734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10831106	0.86[ASN][1000 genomes]
rs11020555	0.84[EUR][1000 genomes]
rs11607920	0.82[EUR][1000 genomes]
rs1848077	0.90[ASN][1000 genomes]
rs35855374	0.85[EUR][1000 genomes]
rs4753510	0.90[ASN][1000 genomes]
rs592928	0.86[ASN][1000 genomes]
rs61904771	0.88[EUR][1000 genomes]
rs7117268	0.81[EUR][1000 genomes]
rs7122140	0.89[ASN][1000 genomes]
rs7124077	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv975968	chr11:93591410-93597199	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93589800-93595000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:93591200-93594800	Weak transcription	Osteobl	bone
3	chr11:93592000-93594800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:93593400-93594800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:93593800-93595200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:93594400-93594800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:93594600-93595600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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