Variant report

Variant	rs10831106
Chromosome Location	chr11:93583790-93583791
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:93583485-93583843	MCF-7	breast:	n/a	n/a
2	POLR2A	chr11:93583617-93583838	H1-hESC	embryonic stem cell:	n/a	n/a
3	E2F6	chr11:93583249-93583841	H1-hESC	embryonic stem cell:	n/a	chr11:93583451-93583465 chr11:93583540-93583549
4	TAF1	chr11:93583567-93583803	SK-N-SH	brain:	n/a	n/a
5	MAX	chr11:93583216-93583876	HepG2	liver:	n/a	n/a
6	MAX	chr11:93583227-93583861	H1-hESC	embryonic stem cell:	n/a	n/a
7	MAX	chr11:93583219-93583834	H1-hESC	embryonic stem cell:	n/a	n/a
8	CTCF	chr11:93583660-93583810	HEEpiC	esophagus:	n/a	n/a
9	CTCF	chr11:93583756-93583792	Kidney_OC	kidney:	n/a	n/a
10	CTCF	chr11:93583660-93583810	AG04449	skin:	n/a	n/a
11	CTCF	chr11:93583640-93583790	HMF	breast:	n/a	n/a
12	POLR2A	chr11:93583525-93583860	H1-hESC	embryonic stem cell:	n/a	n/a
13	MAX	chr11:93583201-93583841	SK-N-SH	brain:	n/a	n/a
14	E2F6	chr11:93583231-93583924	H1-hESC	embryonic stem cell:	n/a	chr11:93583451-93583465 chr11:93583540-93583549
15	MXI1	chr11:93582764-93584022	SK-N-SH	brain:	n/a	n/a
16	E2F6	chr11:93583372-93583832	A549	lung:	n/a	chr11:93583451-93583465 chr11:93583540-93583549
17	UBTF	chr11:93582841-93583800	K562	blood:	n/a	n/a
18	MAX	chr11:93583166-93583814	A549	lung:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:93583750-93583800	A549	lung:	n/a
2	chr11:93583750-93583800	SKMC	muscle:	n/a
3	chr11:93583763-93583813	HMEC	breast:	n/a
4	chr11:93583763-93583813	SKMC	muscle:	n/a
5	chr11:93583750-93583800	PANC-1	pancreas:	n/a
6	chr11:93583763-93583813	HEEpiC	esophagus:	n/a
7	chr11:93583763-93583813	Hepatocyte	liver:	n/a
8	chr11:93583750-93583800	HCM	heart:	n/a
9	chr11:93583763-93583813	GM06990	blood:	n/a
10	chr11:93583750-93583800	SK-N-SH_RA	brain:	n/a
11	chr11:93583750-93583800	AG09309	skin:	n/a
12	chr11:93583750-93583800	AG04450	lung:	fetal
13	chr11:93583750-93583800	SAEC	small airway:	n/a
14	chr11:93583763-93583813	HPAEpiC	pulmonary alveolar:	n/a
15	chr11:93583750-93583800	Caco-2	colon:	n/a
16	chr11:93583763-93583813	HCM	heart:	n/a
17	chr11:93583750-93583800	H1-hESC	embryonic stem cell:	embryo
18	chr11:93583763-93583813	HUVEC	blood vessel:	n/a
19	chr11:93583750-93583800	HPAEpiC	pulmonary alveolar:	n/a
20	chr11:93583763-93583813	Jurkat	blood:	n/a
21	chr11:93583763-93583813	HCPEpiC	choroid plexus:	n/a
22	chr11:93583763-93583813	AG09309	skin:	n/a
23	chr11:93583750-93583800	HRPEpiC	eye:	n/a
24	chr11:93583750-93583800	GM12891	blood:	n/a
25	chr11:93583763-93583813	PrEC	prostate:	n/a
26	chr11:93583763-93583813	HEK293	kidney:	embryo
27	chr11:93583763-93583813	AoSMC	blood vessel:	n/a
28	chr11:93583763-93583813	IMR90	lung:	fetal
29	chr11:93583750-93583800	GM06990	blood:	n/a
30	chr11:93583763-93583813	PANC-1	pancreas:	n/a
31	chr11:93583750-93583800	PrEC	prostate:	n/a
32	chr11:93583750-93583800	BE2_C	brain:	n/a
33	chr11:93583750-93583800	IMR90	lung:	fetal
34	chr11:93583763-93583813	BJ	skin:	n/a
35	chr11:93583763-93583813	GM19239	blood:	n/a
36	chr11:93583763-93583813	CMK	blood:	n/a
37	chr11:93583763-93583813	NHBE	bronchial:	n/a
38	chr11:93583763-93583813	HL-60	blood:	n/a
39	chr11:93583763-93583813	SK-N-SH_RA	brain:	n/a
40	chr11:93583750-93583800	HCPEpiC	choroid plexus:	n/a
41	chr11:93583763-93583813	HAEpiC	amniotic membrane:	n/a
42	chr11:93583750-93583800	HEK293	kidney:	embryo
43	chr11:93583750-93583800	ProgFib	skin:	n/a
44	chr11:93583763-93583813	GM12892	blood:	n/a
45	chr11:93583750-93583800	GM19239	blood:	n/a
46	chr11:93583763-93583813	HIPEpiC	eye:	n/a
47	chr11:93583763-93583813	MCF-7	breast:	n/a
48	chr11:93583763-93583813	SAEC	small airway:	n/a
49	chr11:93583763-93583813	H1-hESC	embryonic stem cell:	embryo
50	chr11:93583763-93583813	HCF	heart:	n/a

No data

Variant related genes	Relation type
VSTM5	TF binding region
VSTM5	CpG island

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11605080	0.86[ASN][1000 genomes]
rs1553604	0.80[EUR][1000 genomes]
rs1605288	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1605289	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1605291	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1848076	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1848077	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1848078	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1848079	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3913857	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4753506	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4753507	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4753510	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4753511	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs592928	0.86[ASN][1000 genomes]
rs6483267	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7111123	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7111771	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7122140	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7124077	0.93[ASN][1000 genomes]
rs7127486	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7130590	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7130837	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs732358	0.80[EUR][1000 genomes]
rs732359	0.80[EUR][1000 genomes]
rs7940081	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7947606	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93578400-93583800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:93582600-93584200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:93582600-93584200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:93582600-93584200	Enhancers	NHDF-Ad	bronchial
5	chr11:93582800-93583800	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr11:93582800-93583800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:93582800-93583800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr11:93582800-93583800	Enhancers	Liver	Liver
9	chr11:93582800-93583800	Active TSS	Brain Cingulate Gyrus	brain
10	chr11:93582800-93583800	Active TSS	Brain Inferior Temporal Lobe	brain
11	chr11:93582800-93584000	Active TSS	Brain Angular Gyrus	brain
12	chr11:93582800-93584000	Active TSS	Colon Smooth Muscle	Colon
13	chr11:93582800-93584000	Active TSS	Rectal Smooth Muscle	rectum
14	chr11:93582800-93584200	Enhancers	Fetal Brain Male	brain
15	chr11:93582800-93584200	Active TSS	Fetal Kidney	kidney
16	chr11:93582800-93584200	Active TSS	Fetal Lung	lung
17	chr11:93583000-93583800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:93583000-93583800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr11:93583000-93583800	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr11:93583000-93583800	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr11:93583000-93583800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
22	chr11:93583000-93583800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
23	chr11:93583000-93583800	Active TSS	Muscle Satellite Cultured Cells	--
24	chr11:93583000-93583800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
25	chr11:93583000-93583800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:93583000-93583800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:93583000-93583800	Active TSS	Aorta	Aorta
28	chr11:93583000-93583800	Active TSS	Brain Anterior Caudate	brain
29	chr11:93583000-93583800	Active TSS	Left Ventricle	heart
30	chr11:93583000-93583800	Active TSS	Right Atrium	heart
31	chr11:93583000-93583800	Active TSS	Right Ventricle	heart
32	chr11:93583000-93583800	Active TSS	A549	lung
33	chr11:93583000-93584000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:93583000-93584000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:93583000-93584000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:93583000-93584000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:93583000-93584000	Active TSS	Duodenum Smooth Muscle	Duodenum
38	chr11:93583000-93584200	Active TSS	Fetal Brain Female	brain
39	chr11:93583000-93584200	Active TSS	Pancreatic Islets	Pancreatic Islet
40	chr11:93583000-93584200	Active TSS	Rectal Mucosa Donor 29	rectum
41	chr11:93583200-93583800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
42	chr11:93583200-93583800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:93583200-93583800	Active TSS	H9 Cell Line	embryonic stem cell
44	chr11:93583200-93583800	Active TSS	HUES64 Cell Line	embryonic stem cell
45	chr11:93583200-93583800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
46	chr11:93583200-93583800	Active TSS	Esophagus	oesophagus
47	chr11:93583200-93583800	Active TSS	Fetal Intestine Small	intestine
48	chr11:93583200-93583800	Active TSS	Gastric	stomach
49	chr11:93583200-93583800	Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr11:93583200-93583800	Active TSS	Skeletal Muscle Female	skeletal muscle

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