Variant report

Variant	rs7940081
Chromosome Location	chr11:93584702-93584703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:93584700-93584850	Caco-2	colon:	n/a	n/a
2	CTCF	chr11:93584700-93584850	GM12875	blood:	n/a	n/a
3	CTCF	chr11:93584660-93584810	BE2_C	brain:	n/a	n/a
4	CTCF	chr11:93584700-93584850	AG09319	gingival:	n/a	n/a
5	CTCF	chr11:93584680-93584830	HRPEpiC	eye:	n/a	n/a
6	ZNF384	chr11:93584580-93584709	K562	blood:	n/a	n/a

Variant related genes	Relation type
VSTM5	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10765637	0.83[AMR][1000 genomes]
rs10831106	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1553604	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1605288	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1605289	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1605291	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1848076	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1848077	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1848078	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1848079	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1973546	0.82[AMR][1000 genomes]
rs3913857	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4753506	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4753507	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4753508	0.84[AMR][1000 genomes]
rs4753509	0.82[AMR][1000 genomes]
rs4753510	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4753511	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs584462	0.83[AMR][1000 genomes]
rs589024	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs608479	0.80[AMR][1000 genomes]
rs622372	0.83[AMR][1000 genomes]
rs6483267	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7108328	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7111123	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7111771	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7112538	0.84[AMR][1000 genomes]
rs7122140	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7127486	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7130590	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7130837	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs732358	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs732359	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7947606	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93583800-93588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:93584000-93591000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:93584200-93588600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:93584200-93590600	Weak transcription	Fetal Brain Male	brain
5	chr11:93584400-93590600	Weak transcription	Aorta	Aorta

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