Variant report

Variant	rs589024
Chromosome Location	chr11:93597511-93597512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93591127..93592924-chr11:93594968..93597943,2	K562	blood:
2	chr11:93595699..93598655-chr11:93614641..93616406,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10765637	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11020572	0.88[EUR][1000 genomes]
rs1553604	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1605288	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1605289	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1605291	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1848076	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1848078	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1848079	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1973546	0.81[EUR][1000 genomes]
rs3913857	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4753506	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4753507	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4753511	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4753512	0.87[EUR][1000 genomes]
rs584462	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs608479	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs622372	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6483267	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7108328	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7111123	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7111268	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7111771	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7112538	0.87[EUR][1000 genomes]
rs7127486	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7130590	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7130837	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs732358	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs732359	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7940081	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7947606	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93595400-93603600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:93597200-93597600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr11:93597400-93604600	Weak transcription	Stomach Mucosa	stomach

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