Variant report

Variant	rs7108328
Chromosome Location	chr11:93594946-93594947
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93589131..93590724-chr11:93594379..93597024,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10765637	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11020572	0.87[EUR][1000 genomes]
rs1553604	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1605288	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1605289	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1605291	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1848076	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1848078	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1848079	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1973546	0.82[EUR][1000 genomes]
rs3913857	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4753506	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4753507	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4753511	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4753512	0.86[EUR][1000 genomes]
rs584462	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs589024	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs608479	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs622372	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6483267	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7111123	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7111268	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7111771	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7112538	0.86[EUR][1000 genomes]
rs7127486	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7130590	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7130837	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs732358	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs732359	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7940081	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7947606	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv975968	chr11:93591410-93597199	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93589800-93595000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:93593800-93595200	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr11:93594600-93595600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:93594800-93595200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:93594800-93595200	Enhancers	NHDF-Ad	bronchial
6	chr11:93594800-93595400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr11:93594800-93595400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:93594800-93595600	Enhancers	K562	blood

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