Variant report

Variant	rs7122140
Chromosome Location	chr11:93585420-93585421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93584944..93588015-chr11:93589210..93592115,3	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10831106	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11605080	0.89[ASN][1000 genomes]
rs1553604	0.81[EUR][1000 genomes]
rs1605288	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1605289	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1605291	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1848076	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1848077	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1848078	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1848079	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3913857	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4753506	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4753507	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4753510	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4753511	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs592928	0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6483267	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7111123	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7111771	0.92[CEU][hapmap];0.87[GIH][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7124077	0.91[ASN][1000 genomes]
rs7127486	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7130590	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7130837	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs732358	0.81[EUR][1000 genomes]
rs732359	0.81[EUR][1000 genomes]
rs7940081	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7947606	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7122140	GPR83	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93583800-93588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:93584000-93591000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:93584200-93588600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:93584200-93590600	Weak transcription	Fetal Brain Male	brain
5	chr11:93584400-93590600	Weak transcription	Aorta	Aorta

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