Variant report

Variant	rs583247
Chromosome Location	chr11:93611216-93611217
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11020555	0.85[EUR][1000 genomes]
rs11607920	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35855374	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs58046905	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61904771	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
3	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93609000-93613200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr11:93609200-93613600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:93609800-93615400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:93610200-93613200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:93610400-93612000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:93610600-93611400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:93610600-93613000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr11:93610600-93613200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:93611000-93613400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr11:93611200-93613200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:93611200-93613600	Enhancers	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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