Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10430917	0.86[EUR][1000 genomes]
rs10430918	0.85[EUR][1000 genomes]
rs10767079	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10767081	0.81[ASN][1000 genomes]
rs10834123	0.81[EUR][1000 genomes]
rs10834124	0.86[EUR][1000 genomes]
rs10834125	0.91[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs10834126	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11027284	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11027285	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11027310	0.96[ASN][1000 genomes]
rs12224604	0.91[CEU][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs1350951	0.85[EUR][1000 genomes]
rs1462542	0.86[EUR][1000 genomes]
rs1462562	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1564096	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1564097	0.97[ASN][1000 genomes]
rs2126509	0.86[EUR][1000 genomes]
rs34766222	0.82[EUR][1000 genomes]
rs4244499	0.84[EUR][1000 genomes]
rs4244500	0.84[EUR][1000 genomes]
rs4244501	0.85[EUR][1000 genomes]
rs4267070	0.86[EUR][1000 genomes]
rs4923111	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs6483959	0.93[ASN][1000 genomes]
rs7121472	0.86[EUR][1000 genomes]
rs7483970	0.91[EUR][1000 genomes]
rs7931400	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7931521	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7946303	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9943664	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832087	chr11:23404474-23569183	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1038101	chr11:23556680-23685548	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23561600-23577600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:23561800-23565400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:23562600-23564800	Enhancers	Dnd41	blood
4	chr11:23563000-23565400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:23563400-23565400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:23564000-23565400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:23564000-23565400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr11:23564000-23565600	Enhancers	HUVEC	blood vessel
9	chr11:23564200-23565200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr11:23564400-23565400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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