Variant report

Variant	rs10767081
Chromosome Location	chr11:23546308-23546309
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10430917	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10430918	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10500960	0.83[ASN][1000 genomes]
rs10767079	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10767080	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10834121	0.83[ASN][1000 genomes]
rs10834124	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10834125	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10834126	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10834130	0.81[ASN][1000 genomes]
rs11027280	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11027281	0.83[ASN][1000 genomes]
rs11027284	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11027285	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12224604	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1350951	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1462542	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1462544	0.81[ASN][1000 genomes]
rs1462545	0.81[ASN][1000 genomes]
rs1462562	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1564096	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1564097	0.82[ASN][1000 genomes]
rs2126509	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4244499	0.82[ASN][1000 genomes]
rs4244500	0.80[EUR][1000 genomes]
rs4244501	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4267070	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4922660	0.83[ASN][1000 genomes]
rs4923111	0.96[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4923112	0.83[ASN][1000 genomes]
rs6483959	0.86[ASN][1000 genomes]
rs7121472	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7483970	0.88[ASN][1000 genomes]
rs7931400	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7931521	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7943093	0.83[ASN][1000 genomes]
rs7943515	0.83[ASN][1000 genomes]
rs7946303	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832087	chr11:23404474-23569183	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1051066	chr11:23459759-23550295	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23541200-23548600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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