Variant report

Variant	rs11027280
Chromosome Location	chr11:23546458-23546459
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10767079	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10767080	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10767081	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10834123	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10834125	0.81[CEU][hapmap]
rs10834126	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1462562	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1564096	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4923111	0.80[CEU][hapmap]
rs7931400	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7931521	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7946303	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832087	chr11:23404474-23569183	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1051066	chr11:23459759-23550295	Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23541200-23548600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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