Variant report
| Variant | rs1462544 |
|---|---|
| Chromosome Location | chr11:23536577-23536578 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10430917 | 0.97[ASN][1000 genomes] |
| rs10430918 | 0.96[ASN][1000 genomes] |
| rs10500960 | 0.97[ASN][1000 genomes] |
| rs10767079 | 0.86[ASN][1000 genomes] |
| rs10767081 | 0.81[ASN][1000 genomes] |
| rs10834121 | 0.97[ASN][1000 genomes] |
| rs10834124 | 0.97[ASN][1000 genomes] |
| rs10834125 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10834126 | 0.86[ASN][1000 genomes] |
| rs12224604 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs1350951 | 0.97[ASN][1000 genomes] |
| rs1462542 | 0.97[ASN][1000 genomes] |
| rs1462545 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1462562 | 0.87[ASN][1000 genomes] |
| rs1564096 | 0.84[ASN][1000 genomes] |
| rs2126509 | 0.97[ASN][1000 genomes] |
| rs34766222 | 0.90[ASN][1000 genomes] |
| rs4244499 | 0.97[ASN][1000 genomes] |
| rs4244500 | 0.94[ASN][1000 genomes] |
| rs4244501 | 0.97[ASN][1000 genomes] |
| rs4267070 | 0.97[ASN][1000 genomes] |
| rs4922660 | 0.97[ASN][1000 genomes] |
| rs4923111 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs4923112 | 0.97[ASN][1000 genomes] |
| rs7105601 | 0.89[ASN][1000 genomes] |
| rs7121472 | 0.97[ASN][1000 genomes] |
| rs7483970 | 0.89[ASN][1000 genomes] |
| rs7931400 | 0.82[ASN][1000 genomes] |
| rs7931521 | 0.84[ASN][1000 genomes] |
| rs7943093 | 0.97[ASN][1000 genomes] |
| rs7943515 | 0.97[ASN][1000 genomes] |
| rs7946303 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832087 | chr11:23404474-23569183 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1051066 | chr11:23459759-23550295 | Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv976450 | chr11:23521519-23540267 | Enhancers Weak transcription | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv976451 | chr11:23522811-23542168 | Enhancers Weak transcription | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:23534400-23540800 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
