Variant report
| Variant | rs10834418 |
|---|---|
| Chromosome Location | chr11:24689761-24689762 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10454001 | 0.82[ASN][1000 genomes] |
| rs10767237 | 0.82[ASN][1000 genomes] |
| rs10834426 | 0.83[ASN][1000 genomes] |
| rs10834427 | 0.83[ASN][1000 genomes] |
| rs10834428 | 0.83[ASN][1000 genomes] |
| rs10834429 | 0.82[ASN][1000 genomes] |
| rs10834430 | 0.82[ASN][1000 genomes] |
| rs10834431 | 0.82[ASN][1000 genomes] |
| rs10834432 | 0.82[ASN][1000 genomes] |
| rs11028096 | 0.97[ASN][1000 genomes] |
| rs11028097 | 0.87[ASN][1000 genomes] |
| rs11028100 | 0.83[ASN][1000 genomes] |
| rs11028102 | 0.82[ASN][1000 genomes] |
| rs11028103 | 0.82[ASN][1000 genomes] |
| rs11028104 | 0.82[ASN][1000 genomes] |
| rs11028105 | 0.82[ASN][1000 genomes] |
| rs12574317 | 0.85[ASN][1000 genomes] |
| rs12574669 | 0.83[ASN][1000 genomes] |
| rs12576065 | 0.97[ASN][1000 genomes] |
| rs12576818 | 0.83[ASN][1000 genomes] |
| rs12576845 | 0.83[ASN][1000 genomes] |
| rs35843300 | 0.82[ASN][1000 genomes] |
| rs4316510 | 0.82[ASN][1000 genomes] |
| rs4316511 | 0.82[ASN][1000 genomes] |
| rs4575270 | 0.82[ASN][1000 genomes] |
| rs4592420 | 0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4923204 | 0.84[ASN][1000 genomes] |
| rs72882406 | 0.87[ASN][1000 genomes] |
| rs72882416 | 0.83[ASN][1000 genomes] |
| rs72882417 | 0.83[ASN][1000 genomes] |
| rs7394676 | 0.82[ASN][1000 genomes] |
| rs7394678 | 0.82[ASN][1000 genomes] |
| rs7395763 | 0.82[ASN][1000 genomes] |
| rs7396077 | 0.82[ASN][1000 genomes] |
| rs7481607 | 0.82[ASN][1000 genomes] |
| rs7944845 | 0.87[ASN][1000 genomes] |
| rs7949406 | 0.82[CHB][hapmap] |
| rs9705232 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1055026 | chr11:24151133-24737122 | Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037744 | chr11:24174588-24737122 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv897093 | chr11:24675207-24736493 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs10834418 | SLC6A5 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:24686200-24691200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr11:24687400-24690400 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
| 3 | chr11:24689600-24690000 | Enhancers | Fetal Kidney | kidney |
