Variant report

Variant	rs10836512
Chromosome Location	chr11:36180007-36180008
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:36179920-36180070	K562	blood:	n/a	n/a

Variant related genes	Relation type
LDLRAD3	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11033468	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1105373	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756288	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756289	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57412870	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36171400-36184000	Weak transcription	Right Atrium	heart
2	chr11:36171600-36187800	Weak transcription	Spleen	Spleen
3	chr11:36172000-36184000	Weak transcription	Pancreas	Pancrea
4	chr11:36172000-36184200	Weak transcription	Fetal Intestine Small	intestine
5	chr11:36172600-36183400	Weak transcription	Hela-S3	cervix
6	chr11:36172600-36190400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:36173000-36183200	Weak transcription	HSMMtube	muscle
8	chr11:36175000-36184000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:36175200-36183800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:36175400-36181400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:36175600-36184000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:36175600-36184200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:36176600-36184000	Weak transcription	Right Ventricle	heart
14	chr11:36176800-36181400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:36176800-36181400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:36177800-36181200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:36178000-36181400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:36178000-36184000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:36178200-36181400	Weak transcription	Lung	lung
20	chr11:36178200-36183200	Weak transcription	Rectal Smooth Muscle	rectum
21	chr11:36178200-36186000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:36178200-36187200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:36178400-36181200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:36178400-36181600	Weak transcription	Fetal Kidney	kidney
25	chr11:36178400-36183200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr11:36178400-36183800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr11:36178600-36182800	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr11:36178600-36184000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:36178800-36181400	Weak transcription	Fetal Heart	heart
30	chr11:36178800-36182600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr11:36178800-36184000	Weak transcription	Brain Substantia Nigra	brain
32	chr11:36179000-36181200	Weak transcription	Fetal Brain Female	brain
33	chr11:36179000-36182400	Weak transcription	HMEC	breast
34	chr11:36179000-36183800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:36179000-36183800	Weak transcription	Adipose Nuclei	Adipose
36	chr11:36179000-36184400	Weak transcription	Brain Angular Gyrus	brain
37	chr11:36179200-36181400	Weak transcription	Fetal Brain Male	brain
38	chr11:36179200-36183400	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:36179200-36183800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:36179200-36183800	Weak transcription	NHLF	lung
41	chr11:36179200-36185600	Weak transcription	NHEK	skin
42	chr11:36179400-36184000	Weak transcription	Left Ventricle	heart
43	chr11:36179400-36184000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:36179400-36184000	Weak transcription	NHDF-Ad	bronchial
45	chr11:36179400-36185600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr11:36179400-36185800	Weak transcription	HSMM	muscle
47	chr11:36179600-36180400	Weak transcription	Brain Germinal Matrix	brain
48	chr11:36179600-36181400	Weak transcription	Ovary	ovary
49	chr11:36179600-36182800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:36179600-36183000	Weak transcription	Fetal Stomach	stomach

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