Variant report

Variant	rs1105373
Chromosome Location	chr11:36177311-36177312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36177041..36178787-chr11:36285024..36287447,2	MCF-7	breast:
2	chr11:36177279..36177823-chr11:36279993..36280530,3	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10836512	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033468	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2204508	1.00[JPT][hapmap]
rs4450151	1.00[JPT][hapmap]
rs4756288	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756289	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756295	1.00[JPT][hapmap]
rs57412870	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484826	1.00[JPT][hapmap]
rs6484828	1.00[JPT][hapmap]
rs7110901	1.00[JPT][hapmap]
rs7111128	1.00[JPT][hapmap]
rs7111826	0.80[YRI][hapmap]
rs7481996	1.00[JPT][hapmap]
rs7931368	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36169000-36178200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:36171400-36184000	Weak transcription	Right Atrium	heart
3	chr11:36171600-36187800	Weak transcription	Spleen	Spleen
4	chr11:36171800-36177800	Weak transcription	Esophagus	oesophagus
5	chr11:36172000-36177800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:36172000-36184000	Weak transcription	Pancreas	Pancrea
7	chr11:36172000-36184200	Weak transcription	Fetal Intestine Small	intestine
8	chr11:36172600-36177400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:36172600-36183400	Weak transcription	Hela-S3	cervix
10	chr11:36172600-36190400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:36172800-36177600	Weak transcription	A549	lung
12	chr11:36172800-36177600	Weak transcription	NH-A	brain
13	chr11:36173000-36177400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:36173000-36183200	Weak transcription	HSMMtube	muscle
15	chr11:36173600-36177400	Weak transcription	HMEC	breast
16	chr11:36173600-36179600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr11:36174200-36177400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:36174600-36177600	Enhancers	Brain Substantia Nigra	brain
19	chr11:36174600-36177800	Weak transcription	Osteobl	bone
20	chr11:36174600-36178400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:36174600-36179600	Enhancers	Ovary	ovary
22	chr11:36174800-36177800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:36175000-36177800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:36175000-36180000	Enhancers	Fetal Lung	lung
25	chr11:36175000-36184000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr11:36175200-36177400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:36175200-36177800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:36175200-36178000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
29	chr11:36175200-36179600	Enhancers	Fetal Stomach	stomach
30	chr11:36175200-36183800	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr11:36175400-36178400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:36175400-36181400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr11:36175600-36177600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:36175600-36184000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr11:36175600-36184200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr11:36175800-36179200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:36175800-36179800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr11:36175800-36180000	Enhancers	Fetal Muscle Leg	muscle
39	chr11:36176000-36179800	Enhancers	HUVEC	blood vessel
40	chr11:36176200-36178400	Enhancers	Fetal Kidney	kidney
41	chr11:36176200-36179400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:36176400-36177600	Enhancers	Brain Germinal Matrix	brain
43	chr11:36176400-36177600	Enhancers	Brain Hippocampus Middle	brain
44	chr11:36176400-36177800	Enhancers	Brain Anterior Caudate	brain
45	chr11:36176400-36177800	Enhancers	Brain Inferior Temporal Lobe	brain
46	chr11:36176400-36178000	Enhancers	Fetal Muscle Trunk	muscle
47	chr11:36176400-36178600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr11:36176400-36179000	Enhancers	Fetal Brain Female	brain
49	chr11:36176400-36179200	Enhancers	NHLF	lung
50	chr11:36176400-36179400	Enhancers	NHDF-Ad	bronchial

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