Variant report

Variant	rs7931368
Chromosome Location	chr11:36220911-36220912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10466393	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11033468	1.00[JPT][hapmap]
rs1105373	1.00[JPT][hapmap]
rs12275029	0.82[MEX][hapmap]
rs17813639	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2204508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34758421	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3980393	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs4450151	1.00[JPT][hapmap]
rs4755442	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4755443	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4756288	1.00[JPT][hapmap]
rs4756289	1.00[JPT][hapmap]
rs4756295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756296	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6484826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111128	1.00[JPT][hapmap]
rs7481996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7931896	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7943733	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7946514	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7931368	WT1	cis	cerebellum	SCAN

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36200400-36223800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr11:36207800-36222800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:36208600-36231600	Weak transcription	HMEC	breast
4	chr11:36212400-36225800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:36216600-36231600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:36217400-36222400	Weak transcription	Left Ventricle	heart
7	chr11:36217600-36223000	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:36217800-36226400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:36218000-36222400	Weak transcription	Brain Anterior Caudate	brain
10	chr11:36218000-36233400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:36218000-36252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:36218200-36227000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:36218200-36233000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:36218400-36221000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr11:36218400-36221000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:36218400-36222000	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:36218400-36224400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr11:36218400-36224800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:36218400-36233000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:36218600-36222600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:36218600-36227000	Weak transcription	HUVEC	blood vessel
22	chr11:36218600-36232800	Weak transcription	Brain Hippocampus Middle	brain
23	chr11:36218800-36222400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr11:36218800-36230200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:36218800-36230400	Weak transcription	Pancreas	Pancrea
26	chr11:36219000-36221200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:36219000-36221400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:36219000-36222000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:36219200-36221200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:36219200-36221200	Weak transcription	NHDF-Ad	bronchial
31	chr11:36219200-36221800	Weak transcription	Brain Germinal Matrix	brain
32	chr11:36219200-36221800	Weak transcription	Fetal Brain Male	brain
33	chr11:36219200-36222200	Weak transcription	Fetal Brain Female	brain
34	chr11:36219200-36227000	Weak transcription	Brain Substantia Nigra	brain
35	chr11:36219200-36232800	Weak transcription	Fetal Lung	lung
36	chr11:36219200-36248600	Weak transcription	Ovary	ovary
37	chr11:36219400-36221200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:36219400-36221200	Strong transcription	Fetal Muscle Leg	muscle
39	chr11:36219400-36221400	Strong transcription	Fetal Intestine Small	intestine
40	chr11:36219400-36221600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:36219400-36222200	Strong transcription	Fetal Muscle Trunk	muscle
42	chr11:36219400-36225600	Weak transcription	Fetal Kidney	kidney
43	chr11:36219600-36221400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr11:36219600-36222800	Strong transcription	HSMMtube	muscle
45	chr11:36220000-36221200	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr11:36220000-36221800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:36220200-36226400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:36220200-36231600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:36220400-36221000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr11:36220400-36221800	Weak transcription	Esophagus	oesophagus

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