Variant report

Variant	rs7481996
Chromosome Location	chr11:36201940-36201941
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10466393	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs11033468	1.00[JPT][hapmap]
rs1105373	1.00[JPT][hapmap]
rs17813639	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2204508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34758421	0.82[EUR][1000 genomes]
rs4450151	1.00[JPT][hapmap]
rs4755442	0.85[EUR][1000 genomes]
rs4755443	0.83[EUR][1000 genomes]
rs4756288	1.00[JPT][hapmap]
rs4756289	1.00[JPT][hapmap]
rs4756295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4756296	0.83[EUR][1000 genomes]
rs6484826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6484828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7110901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7111128	1.00[JPT][hapmap]
rs7931368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7931896	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7943733	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7946514	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36184400-36220000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:36184800-36206200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:36185200-36203600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:36185200-36207800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:36186400-36207600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:36186600-36206000	Weak transcription	HSMM	muscle
7	chr11:36188000-36213600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:36189400-36203000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:36192600-36203400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:36196800-36203400	Weak transcription	Fetal Lung	lung
11	chr11:36198000-36207000	Weak transcription	Fetal Stomach	stomach
12	chr11:36198000-36207200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:36198200-36207000	Weak transcription	NHEK	skin
14	chr11:36198400-36207000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:36198400-36207000	Weak transcription	Fetal Muscle Leg	muscle
16	chr11:36198600-36204200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:36199800-36202000	Strong transcription	HSMMtube	muscle
18	chr11:36199800-36207200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:36200400-36223800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr11:36200600-36202800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:36201200-36207600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:36201400-36217400	Weak transcription	Ovary	ovary
23	chr11:36201800-36202000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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