Variant report

Variant	rs6484826
Chromosome Location	chr11:36210482-36210483
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10466393	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11033468	1.00[JPT][hapmap]
rs1105373	1.00[JPT][hapmap]
rs17813639	1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs2204508	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34758421	0.88[EUR][1000 genomes]
rs4450151	1.00[JPT][hapmap]
rs4755442	0.87[EUR][1000 genomes]
rs4755443	0.89[EUR][1000 genomes]
rs4756288	1.00[JPT][hapmap]
rs4756289	1.00[JPT][hapmap]
rs4756295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756296	0.89[EUR][1000 genomes]
rs6484828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110901	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7111128	1.00[JPT][hapmap]
rs7481996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7931368	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7931896	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7943733	1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs7946514	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6484826	WT1	cis	cerebellum	SCAN

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36184400-36220000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:36188000-36213600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:36200400-36223800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr11:36201400-36217400	Weak transcription	Ovary	ovary
5	chr11:36202200-36217200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:36203400-36218000	Weak transcription	NHLF	lung
7	chr11:36204400-36211400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:36204400-36211400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:36204400-36213800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:36204400-36217200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:36204600-36212600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:36204800-36215000	Weak transcription	Brain Substantia Nigra	brain
13	chr11:36204800-36217400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:36206800-36219400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr11:36207800-36217200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr11:36207800-36222800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:36208000-36217200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:36208200-36214000	Weak transcription	Fetal Stomach	stomach
19	chr11:36208200-36217400	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:36208200-36217400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:36208200-36217400	Weak transcription	Fetal Kidney	kidney
22	chr11:36208400-36216000	Weak transcription	Fetal Lung	lung
23	chr11:36208400-36217200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:36208400-36217200	Weak transcription	Fetal Brain Male	brain
25	chr11:36208400-36217400	Weak transcription	Adipose Nuclei	Adipose
26	chr11:36208400-36220000	Weak transcription	Esophagus	oesophagus
27	chr11:36208600-36214800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:36208600-36215800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:36208600-36216400	Weak transcription	Brain Germinal Matrix	brain
30	chr11:36208600-36216800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:36208600-36219000	Weak transcription	HSMM	muscle
32	chr11:36208600-36219400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr11:36208600-36220000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr11:36208600-36220000	Weak transcription	NHEK	skin
35	chr11:36208600-36231600	Weak transcription	HMEC	breast
36	chr11:36208800-36213200	Weak transcription	Fetal Heart	heart
37	chr11:36208800-36215800	Weak transcription	Psoas Muscle	Psoas
38	chr11:36209000-36212600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:36209200-36210600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:36209400-36214400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr11:36209600-36214000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr11:36209600-36219200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:36209800-36210600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:36210400-36213400	Weak transcription	HSMMtube	muscle
45	chr11:36210400-36213800	Weak transcription	Fetal Muscle Leg	muscle

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