Variant report

Variant	rs4756296
Chromosome Location	chr11:36222211-36222212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10466393	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17813639	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2204508	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34758421	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4755442	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4755443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4756295	0.89[EUR][1000 genomes]
rs6484826	0.89[EUR][1000 genomes]
rs6484828	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7110901	0.88[EUR][1000 genomes]
rs7481996	0.83[EUR][1000 genomes]
rs7931368	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7931896	0.83[EUR][1000 genomes]
rs7943733	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7946514	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36200400-36223800	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr11:36207800-36222800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:36208600-36231600	Weak transcription	HMEC	breast
4	chr11:36212400-36225800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:36216600-36231600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:36217400-36222400	Weak transcription	Left Ventricle	heart
7	chr11:36217600-36223000	Weak transcription	Colon Smooth Muscle	Colon
8	chr11:36217800-36226400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:36218000-36222400	Weak transcription	Brain Anterior Caudate	brain
10	chr11:36218000-36233400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:36218000-36252200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:36218200-36227000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:36218200-36233000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:36218400-36224400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr11:36218400-36224800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:36218400-36233000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:36218600-36222600	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:36218600-36227000	Weak transcription	HUVEC	blood vessel
19	chr11:36218600-36232800	Weak transcription	Brain Hippocampus Middle	brain
20	chr11:36218800-36222400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:36218800-36230200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:36218800-36230400	Weak transcription	Pancreas	Pancrea
23	chr11:36219200-36227000	Weak transcription	Brain Substantia Nigra	brain
24	chr11:36219200-36232800	Weak transcription	Fetal Lung	lung
25	chr11:36219200-36248600	Weak transcription	Ovary	ovary
26	chr11:36219400-36225600	Weak transcription	Fetal Kidney	kidney
27	chr11:36219600-36222800	Strong transcription	HSMMtube	muscle
28	chr11:36220200-36226400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:36220200-36231600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:36220400-36223200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:36220400-36226400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:36220400-36226600	Weak transcription	Fetal Intestine Large	intestine
33	chr11:36220400-36228600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr11:36220400-36231400	Weak transcription	NHEK	skin
35	chr11:36220600-36224800	Weak transcription	Fetal Stomach	stomach
36	chr11:36220600-36226800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr11:36220600-36233200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:36220600-36233600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr11:36220600-36241600	Weak transcription	HSMM	muscle
40	chr11:36221200-36225400	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:36221200-36226600	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr11:36221200-36231800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr11:36221200-36233400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:36221400-36231600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr11:36221400-36235200	Weak transcription	Fetal Intestine Small	intestine
46	chr11:36221400-36248800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:36221800-36224000	Enhancers	Fetal Brain Male	brain
48	chr11:36221800-36226800	Enhancers	Brain Germinal Matrix	brain
49	chr11:36222000-36224200	Enhancers	Cortex derived primary cultured neurospheres	brain
50	chr11:36222000-36239800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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