Variant report

Variant	rs7111826
Chromosome Location	chr11:36176258-36176259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11033468	0.88[YRI][hapmap]
rs1105373	0.80[YRI][hapmap]
rs12576603	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs16928451	1.00[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs16928462	1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs4756288	0.80[YRI][hapmap]
rs4756289	0.80[YRI][hapmap]
rs72935533	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv897225	chr11:36136912-36244190	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7111826	TCP11L1	cis	parietal	SCAN

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36163800-36176800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:36169000-36178200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:36170400-36177000	Weak transcription	Brain Angular Gyrus	brain
4	chr11:36171400-36177200	Weak transcription	Aorta	Aorta
5	chr11:36171400-36177200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:36171400-36184000	Weak transcription	Right Atrium	heart
7	chr11:36171600-36187800	Weak transcription	Spleen	Spleen
8	chr11:36171800-36176800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:36171800-36177800	Weak transcription	Esophagus	oesophagus
10	chr11:36172000-36176400	Weak transcription	Fetal Heart	heart
11	chr11:36172000-36176400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr11:36172000-36177800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:36172000-36184000	Weak transcription	Pancreas	Pancrea
14	chr11:36172000-36184200	Weak transcription	Fetal Intestine Small	intestine
15	chr11:36172600-36177400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:36172600-36183400	Weak transcription	Hela-S3	cervix
17	chr11:36172600-36190400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:36172800-36177600	Weak transcription	A549	lung
19	chr11:36172800-36177600	Weak transcription	NH-A	brain
20	chr11:36173000-36176400	Weak transcription	NHLF	lung
21	chr11:36173000-36176600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:36173000-36177200	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:36173000-36177200	Weak transcription	HSMM	muscle
24	chr11:36173000-36177400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:36173000-36183200	Weak transcription	HSMMtube	muscle
26	chr11:36173200-36176400	Weak transcription	Brain Hippocampus Middle	brain
27	chr11:36173200-36177000	Weak transcription	NHEK	skin
28	chr11:36173200-36177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr11:36173600-36177400	Weak transcription	HMEC	breast
30	chr11:36173600-36179600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr11:36174200-36177400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:36174400-36176800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr11:36174600-36177600	Enhancers	Brain Substantia Nigra	brain
34	chr11:36174600-36177800	Weak transcription	Osteobl	bone
35	chr11:36174600-36178400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:36174600-36179600	Enhancers	Ovary	ovary
37	chr11:36174800-36177800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:36175000-36176400	Weak transcription	Brain Anterior Caudate	brain
39	chr11:36175000-36176600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:36175000-36177000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr11:36175000-36177200	Weak transcription	H1 Cell Line	embryonic stem cell
42	chr11:36175000-36177800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:36175000-36180000	Enhancers	Fetal Lung	lung
44	chr11:36175000-36184000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:36175200-36176400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr11:36175200-36176400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:36175200-36177400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr11:36175200-36177800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr11:36175200-36178000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:36175200-36179600	Enhancers	Fetal Stomach	stomach

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